Hb_053643_010

Information

Type -
Description -
Location Contig53643: 8817-9245
Sequence    

Annotation

kegg
ID mtr:MTR_2g030270
description Zinc finger protein GIS2
nr
ID XP_003594532.1
description Zinc finger protein GIS2 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID U5FUS7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0011s01952g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053643_010 0.0 - - Zinc finger protein GIS2 [Medicago truncatula]
2 Hb_009922_010 0.044566849 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
3 Hb_093432_020 0.0971443186 - - PREDICTED: QWRF motif-containing protein 3 [Jatropha curcas]
4 Hb_002928_070 0.0998027976 - - -
5 Hb_061365_010 0.1424345143 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
6 Hb_137515_010 0.1719055746 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 isoform X1 [Populus euphratica]
7 Hb_001279_230 0.2169806202 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
8 Hb_005203_050 0.2387630572 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
9 Hb_003647_120 0.2587317491 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
10 Hb_003337_070 0.2819706008 - - PREDICTED: probable esterase KAI2 [Jatropha curcas]
11 Hb_001723_110 0.2899606175 - - PREDICTED: solute carrier family 25 member 44-like isoform X2 [Malus domestica]
12 Hb_004108_010 0.2935151295 - - -
13 Hb_089341_010 0.3036029027 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
14 Hb_000684_340 0.3053561308 - - PREDICTED: L-ascorbate peroxidase 2, cytosolic [Pyrus x bretschneideri]
15 Hb_002986_120 0.3109826428 - - -
16 Hb_000398_130 0.3149018939 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
17 Hb_009189_060 0.3157300986 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
18 Hb_009189_030 0.3193450965 - - hypothetical protein PRUPE_ppa023969mg, partial [Prunus persica]
19 Hb_178613_010 0.3196476278 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_027255_010 0.3203717802 transcription factor TF Family: Orphans conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_053643_010 Hb_053643_010 Hb_009922_010 Hb_009922_010 Hb_053643_010--Hb_009922_010 Hb_093432_020 Hb_093432_020 Hb_053643_010--Hb_093432_020 Hb_002928_070 Hb_002928_070 Hb_053643_010--Hb_002928_070 Hb_061365_010 Hb_061365_010 Hb_053643_010--Hb_061365_010 Hb_137515_010 Hb_137515_010 Hb_053643_010--Hb_137515_010 Hb_001279_230 Hb_001279_230 Hb_053643_010--Hb_001279_230 Hb_009922_010--Hb_093432_020 Hb_009922_010--Hb_002928_070 Hb_009922_010--Hb_061365_010 Hb_009922_010--Hb_137515_010 Hb_005203_050 Hb_005203_050 Hb_009922_010--Hb_005203_050 Hb_093432_020--Hb_002928_070 Hb_004108_010 Hb_004108_010 Hb_093432_020--Hb_004108_010 Hb_093432_020--Hb_061365_010 Hb_093432_020--Hb_137515_010 Hb_002928_070--Hb_004108_010 Hb_002928_070--Hb_061365_010 Hb_002928_070--Hb_001279_230 Hb_061365_010--Hb_137515_010 Hb_061365_010--Hb_005203_050 Hb_137515_010--Hb_005203_050 Hb_137515_010--Hb_002928_070 Hb_003647_120 Hb_003647_120 Hb_001279_230--Hb_003647_120 Hb_001104_040 Hb_001104_040 Hb_001279_230--Hb_001104_040 Hb_003337_070 Hb_003337_070 Hb_001279_230--Hb_003337_070 Hb_184326_010 Hb_184326_010 Hb_001279_230--Hb_184326_010 Hb_001723_110 Hb_001723_110 Hb_001279_230--Hb_001723_110 Hb_006745_020 Hb_006745_020 Hb_001279_230--Hb_006745_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.087245 0 0 0.0831554 0.0747716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis