Hb_053929_010

Information

Type -
Description -
Location Contig53929: 1708-2642
Sequence    

Annotation

kegg
ID pop:POPTR_0010s22320g
description POPTRDRAFT_770475; hypothetical protein
nr
ID XP_002315269.1
description hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HU09
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s22320g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47748: 1876-2601
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053929_010 0.0 - - hypothetical protein POPTR_0010s22320g [Populus trichocarpa]
2 Hb_000656_200 0.1032124283 - - PREDICTED: uncharacterized protein LOC105631373 [Jatropha curcas]
3 Hb_000327_070 0.1711949545 transcription factor TF Family: ERF PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X2 [Jatropha curcas]
4 Hb_126398_020 0.1763968258 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000375_250 0.1848652894 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
6 Hb_170878_070 0.1962264551 - - hypothetical protein EUGRSUZ_L008133, partial [Eucalyptus grandis]
7 Hb_101449_010 0.1968634401 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
8 Hb_000009_440 0.198510209 - - PREDICTED: uncharacterized protein LOC105639617 [Jatropha curcas]
9 Hb_001565_010 0.2034040201 - - hypothetical protein JCGZ_07371 [Jatropha curcas]
10 Hb_000203_210 0.205433753 - - PREDICTED: uncharacterized protein LOC105040619 isoform X3 [Elaeis guineensis]
11 Hb_031201_010 0.2057367336 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
12 Hb_001141_040 0.2072638571 - - PREDICTED: protein NETWORKED 1A [Jatropha curcas]
13 Hb_094148_010 0.2091837629 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
14 Hb_119327_010 0.2109556223 - - hypothetical protein POPTR_0075s00200g, partial [Populus trichocarpa]
15 Hb_001840_110 0.2127909878 - - hypothetical protein JCGZ_20198 [Jatropha curcas]
16 Hb_006700_040 0.2132709245 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
17 Hb_000365_220 0.2141244424 - - protein phosphatase-1, putative [Ricinus communis]
18 Hb_002217_200 0.2143379338 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
19 Hb_002811_020 0.2163357115 - - Cysteine synthase [Morus notabilis]
20 Hb_021443_050 0.2171782582 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_053929_010 Hb_053929_010 Hb_000656_200 Hb_000656_200 Hb_053929_010--Hb_000656_200 Hb_000327_070 Hb_000327_070 Hb_053929_010--Hb_000327_070 Hb_126398_020 Hb_126398_020 Hb_053929_010--Hb_126398_020 Hb_000375_250 Hb_000375_250 Hb_053929_010--Hb_000375_250 Hb_170878_070 Hb_170878_070 Hb_053929_010--Hb_170878_070 Hb_101449_010 Hb_101449_010 Hb_053929_010--Hb_101449_010 Hb_033594_100 Hb_033594_100 Hb_000656_200--Hb_033594_100 Hb_006700_040 Hb_006700_040 Hb_000656_200--Hb_006700_040 Hb_008494_090 Hb_008494_090 Hb_000656_200--Hb_008494_090 Hb_067664_010 Hb_067664_010 Hb_000656_200--Hb_067664_010 Hb_000365_220 Hb_000365_220 Hb_000656_200--Hb_000365_220 Hb_004041_100 Hb_004041_100 Hb_000327_070--Hb_004041_100 Hb_000327_070--Hb_126398_020 Hb_003845_020 Hb_003845_020 Hb_000327_070--Hb_003845_020 Hb_001776_010 Hb_001776_010 Hb_000327_070--Hb_001776_010 Hb_000853_060 Hb_000853_060 Hb_000327_070--Hb_000853_060 Hb_126398_020--Hb_006700_040 Hb_126398_020--Hb_000656_200 Hb_152868_030 Hb_152868_030 Hb_126398_020--Hb_152868_030 Hb_002232_160 Hb_002232_160 Hb_126398_020--Hb_002232_160 Hb_003494_180 Hb_003494_180 Hb_000375_250--Hb_003494_180 Hb_031201_010 Hb_031201_010 Hb_000375_250--Hb_031201_010 Hb_001856_110 Hb_001856_110 Hb_000375_250--Hb_001856_110 Hb_007205_020 Hb_007205_020 Hb_000375_250--Hb_007205_020 Hb_002845_020 Hb_002845_020 Hb_000375_250--Hb_002845_020 Hb_057321_010 Hb_057321_010 Hb_000375_250--Hb_057321_010 Hb_001565_010 Hb_001565_010 Hb_170878_070--Hb_001565_010 Hb_094148_010 Hb_094148_010 Hb_170878_070--Hb_094148_010 Hb_004627_020 Hb_004627_020 Hb_170878_070--Hb_004627_020 Hb_001186_120 Hb_001186_120 Hb_170878_070--Hb_001186_120 Hb_000215_130 Hb_000215_130 Hb_170878_070--Hb_000215_130 Hb_001366_050 Hb_001366_050 Hb_170878_070--Hb_001366_050 Hb_101449_010--Hb_033594_100 Hb_000009_440 Hb_000009_440 Hb_101449_010--Hb_000009_440 Hb_001268_300 Hb_001268_300 Hb_101449_010--Hb_001268_300 Hb_082683_010 Hb_082683_010 Hb_101449_010--Hb_082683_010 Hb_011853_010 Hb_011853_010 Hb_101449_010--Hb_011853_010 Hb_101449_010--Hb_152868_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.859968 5.47227 6.67435 2.00386 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98066 0.8299 0.176099 11.5901 9.91238

CAGE analysis