Hb_053971_010

Information

Type -
Description -
Location Contig53971: 129-488
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_053971_010 0.0 - - -
2 Hb_004032_080 0.2464950118 transcription factor TF Family: MIKC PREDICTED: agamous-like MADS-box protein AGL11 [Jatropha curcas]
3 Hb_026247_030 0.2577106362 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
4 Hb_146006_010 0.2650009236 - - PREDICTED: uncharacterized protein LOC104091534 [Nicotiana tomentosiformis]
5 Hb_002326_050 0.2681751355 - - PREDICTED: uncharacterized protein LOC105633701 [Jatropha curcas]
6 Hb_000522_140 0.2753241328 - - protein transporter, putative [Ricinus communis]
7 Hb_000099_210 0.2757594212 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
8 Hb_074961_010 0.2785020029 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
9 Hb_000427_070 0.280592131 - - -
10 Hb_000185_200 0.2823679732 - - PREDICTED: protein trichome birefringence-like 42 [Jatropha curcas]
11 Hb_000705_220 0.2823692034 - - unnamed protein product [Vitis vinifera]
12 Hb_030291_020 0.283591019 - - PREDICTED: protein argonaute 5 isoform X2 [Jatropha curcas]
13 Hb_001450_100 0.2850511878 - - serine/threonine-protein kinase bri1, putative [Ricinus communis]
14 Hb_000392_100 0.2872241215 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
15 Hb_015401_030 0.2876548741 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_000117_010 0.2893003544 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
17 Hb_000215_260 0.2894136524 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
18 Hb_000056_230 0.2918264561 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
19 Hb_004156_060 0.2928324243 - - neutral/alkaline invertase 1 [Hevea brasiliensis]
20 Hb_056506_050 0.293405495 - - hypothetical protein B456_007G294000 [Gossypium raimondii]

Gene co-expression network

sample Hb_053971_010 Hb_053971_010 Hb_004032_080 Hb_004032_080 Hb_053971_010--Hb_004032_080 Hb_026247_030 Hb_026247_030 Hb_053971_010--Hb_026247_030 Hb_146006_010 Hb_146006_010 Hb_053971_010--Hb_146006_010 Hb_002326_050 Hb_002326_050 Hb_053971_010--Hb_002326_050 Hb_000522_140 Hb_000522_140 Hb_053971_010--Hb_000522_140 Hb_000099_210 Hb_000099_210 Hb_053971_010--Hb_000099_210 Hb_002843_160 Hb_002843_160 Hb_004032_080--Hb_002843_160 Hb_004884_060 Hb_004884_060 Hb_004032_080--Hb_004884_060 Hb_002989_080 Hb_002989_080 Hb_004032_080--Hb_002989_080 Hb_007178_010 Hb_007178_010 Hb_004032_080--Hb_007178_010 Hb_000907_100 Hb_000907_100 Hb_004032_080--Hb_000907_100 Hb_000571_070 Hb_000571_070 Hb_004032_080--Hb_000571_070 Hb_000185_200 Hb_000185_200 Hb_026247_030--Hb_000185_200 Hb_005735_030 Hb_005735_030 Hb_026247_030--Hb_005735_030 Hb_000258_080 Hb_000258_080 Hb_026247_030--Hb_000258_080 Hb_000084_310 Hb_000084_310 Hb_026247_030--Hb_000084_310 Hb_001916_130 Hb_001916_130 Hb_026247_030--Hb_001916_130 Hb_005167_040 Hb_005167_040 Hb_026247_030--Hb_005167_040 Hb_146006_010--Hb_000099_210 Hb_064885_020 Hb_064885_020 Hb_146006_010--Hb_064885_020 Hb_000392_100 Hb_000392_100 Hb_146006_010--Hb_000392_100 Hb_174541_020 Hb_174541_020 Hb_146006_010--Hb_174541_020 Hb_003589_090 Hb_003589_090 Hb_146006_010--Hb_003589_090 Hb_011287_090 Hb_011287_090 Hb_002326_050--Hb_011287_090 Hb_000077_130 Hb_000077_130 Hb_002326_050--Hb_000077_130 Hb_003106_010 Hb_003106_010 Hb_002326_050--Hb_003106_010 Hb_185467_020 Hb_185467_020 Hb_002326_050--Hb_185467_020 Hb_170193_010 Hb_170193_010 Hb_002326_050--Hb_170193_010 Hb_127003_010 Hb_127003_010 Hb_002326_050--Hb_127003_010 Hb_000850_040 Hb_000850_040 Hb_000522_140--Hb_000850_040 Hb_000522_140--Hb_000099_210 Hb_000136_130 Hb_000136_130 Hb_000522_140--Hb_000136_130 Hb_002235_130 Hb_002235_130 Hb_000522_140--Hb_002235_130 Hb_002265_030 Hb_002265_030 Hb_000522_140--Hb_002265_030 Hb_010964_020 Hb_010964_020 Hb_000522_140--Hb_010964_020 Hb_007603_010 Hb_007603_010 Hb_000099_210--Hb_007603_010 Hb_008406_140 Hb_008406_140 Hb_000099_210--Hb_008406_140 Hb_005976_050 Hb_005976_050 Hb_000099_210--Hb_005976_050 Hb_000031_150 Hb_000031_150 Hb_000099_210--Hb_000031_150 Hb_002102_030 Hb_002102_030 Hb_000099_210--Hb_002102_030 Hb_007810_100 Hb_007810_100 Hb_000099_210--Hb_007810_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.61692 0 0 1.87397 2.44539 4.58493
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.34609 1.60678 0.633333 0

CAGE analysis