Hb_054074_010

Information

Type -
Description -
Location Contig54074: 12962-13715
Sequence    

Annotation

kegg
ID rcu:RCOM_1314160
description hypothetical protein
nr
ID XP_012086633.1
description PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JR11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20379 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47855: 12866-13923
cDNA
(Sanger)
(ID:Location)		 026_P21.ab1: 12866-13638

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054074_010 0.0 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
2 Hb_023386_010 0.0906085041 - - PREDICTED: histidine triad nucleotide-binding protein 3 [Jatropha curcas]
3 Hb_001304_140 0.0985532161 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
4 Hb_010582_010 0.1050630724 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
5 Hb_000820_130 0.1156559045 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
6 Hb_008699_020 0.1169023308 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
7 Hb_001604_030 0.1246474471 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
8 Hb_002391_220 0.1277686234 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
9 Hb_000365_080 0.1299178365 - - PREDICTED: uncharacterized protein LOC105649037 [Jatropha curcas]
10 Hb_001155_040 0.1301780144 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
11 Hb_002107_120 0.1338221099 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
12 Hb_000789_110 0.1350509427 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
13 Hb_000069_140 0.1351552894 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
14 Hb_000270_720 0.1357210776 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
15 Hb_000312_090 0.1378914975 - - PREDICTED: uncharacterized protein LOC105645369 [Jatropha curcas]
16 Hb_005211_190 0.1382281523 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
17 Hb_029904_040 0.1413539581 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
18 Hb_003777_210 0.1439981051 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
19 Hb_007416_020 0.1440645841 - - PREDICTED: uncharacterized protein At1g32220, chloroplastic [Cucumis sativus]
20 Hb_000389_080 0.1445062923 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]

Gene co-expression network

sample Hb_054074_010 Hb_054074_010 Hb_023386_010 Hb_023386_010 Hb_054074_010--Hb_023386_010 Hb_001304_140 Hb_001304_140 Hb_054074_010--Hb_001304_140 Hb_010582_010 Hb_010582_010 Hb_054074_010--Hb_010582_010 Hb_000820_130 Hb_000820_130 Hb_054074_010--Hb_000820_130 Hb_008699_020 Hb_008699_020 Hb_054074_010--Hb_008699_020 Hb_001604_030 Hb_001604_030 Hb_054074_010--Hb_001604_030 Hb_023386_010--Hb_001604_030 Hb_023386_010--Hb_000820_130 Hb_023386_010--Hb_001304_140 Hb_000789_110 Hb_000789_110 Hb_023386_010--Hb_000789_110 Hb_004994_260 Hb_004994_260 Hb_023386_010--Hb_004994_260 Hb_076693_040 Hb_076693_040 Hb_001304_140--Hb_076693_040 Hb_002391_220 Hb_002391_220 Hb_001304_140--Hb_002391_220 Hb_001304_140--Hb_010582_010 Hb_001424_020 Hb_001424_020 Hb_001304_140--Hb_001424_020 Hb_000159_070 Hb_000159_070 Hb_001304_140--Hb_000159_070 Hb_000365_080 Hb_000365_080 Hb_010582_010--Hb_000365_080 Hb_005211_190 Hb_005211_190 Hb_010582_010--Hb_005211_190 Hb_002609_210 Hb_002609_210 Hb_010582_010--Hb_002609_210 Hb_010582_010--Hb_001424_020 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000780_210 Hb_000780_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_001824_010 Hb_001824_010 Hb_008699_020--Hb_001824_010 Hb_008699_020--Hb_000820_130 Hb_002107_120 Hb_002107_120 Hb_008699_020--Hb_002107_120 Hb_001700_020 Hb_001700_020 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070 Hb_001785_040 Hb_001785_040 Hb_001604_030--Hb_001785_040 Hb_000012_100 Hb_000012_100 Hb_001604_030--Hb_000012_100 Hb_001604_030--Hb_000789_110 Hb_000260_200 Hb_000260_200 Hb_001604_030--Hb_000260_200 Hb_002603_150 Hb_002603_150 Hb_001604_030--Hb_002603_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
195.46 50.6623 90.7846 228.265 82.7254 147.053
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
935.041 664.326 239.511 143.187 118.589

CAGE analysis