Hb_054127_020

Information

Type -
Description -
Location Contig54127: 17954-20920
Sequence    

Annotation

kegg
ID rcu:RCOM_0467100
description TRANSPARENT TESTA 12 protein, putative
nr
ID XP_002528064.1
description TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
swissprot
ID Q8RWF5
description MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1
trembl
ID B9SPZ5
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0467100 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mate efflux family protein 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054127_020 0.0 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
2 Hb_006356_030 0.097169836 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_000405_010 0.0986785646 - - hypothetical protein JCGZ_15779 [Jatropha curcas]
4 Hb_000923_110 0.0987913116 - - PREDICTED: uncharacterized protein LOC102624489 [Citrus sinensis]
5 Hb_004445_030 0.1054571523 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002576_010 0.1203030062 - - -
7 Hb_047923_030 0.1352657251 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
8 Hb_011931_090 0.14378316 - - -
9 Hb_139605_010 0.1548063959 - - polyprotein [Citrus endogenous pararetrovirus]
10 Hb_013420_090 0.156037892 - - BnaCnng13090D [Brassica napus]
11 Hb_027917_010 0.1561306684 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
12 Hb_001307_230 0.1565879615 - - PREDICTED: interferon-related developmental regulator 1-like [Jatropha curcas]
13 Hb_026317_020 0.1565906622 - - hypothetical protein VITISV_035911 [Vitis vinifera]
14 Hb_001172_110 0.1566016207 - - hypothetical protein JCGZ_11284 [Jatropha curcas]
15 Hb_001782_090 0.1566079041 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Vitis vinifera]
16 Hb_002375_100 0.1566156888 - - PREDICTED: uncharacterized protein LOC104878944 [Vitis vinifera]
17 Hb_000905_010 0.1566159641 - - PREDICTED: cytochrome P450 705A5-like [Jatropha curcas]
18 Hb_000777_010 0.1566211705 - - PREDICTED: uncharacterized protein LOC105766834 [Gossypium raimondii]
19 Hb_006599_040 0.156631856 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_004145_030 0.1566333444 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]

Gene co-expression network

sample Hb_054127_020 Hb_054127_020 Hb_006356_030 Hb_006356_030 Hb_054127_020--Hb_006356_030 Hb_000405_010 Hb_000405_010 Hb_054127_020--Hb_000405_010 Hb_000923_110 Hb_000923_110 Hb_054127_020--Hb_000923_110 Hb_004445_030 Hb_004445_030 Hb_054127_020--Hb_004445_030 Hb_002576_010 Hb_002576_010 Hb_054127_020--Hb_002576_010 Hb_047923_030 Hb_047923_030 Hb_054127_020--Hb_047923_030 Hb_006356_030--Hb_000923_110 Hb_010367_010 Hb_010367_010 Hb_006356_030--Hb_010367_010 Hb_003868_010 Hb_003868_010 Hb_006356_030--Hb_003868_010 Hb_000025_460 Hb_000025_460 Hb_006356_030--Hb_000025_460 Hb_120076_010 Hb_120076_010 Hb_006356_030--Hb_120076_010 Hb_011931_090 Hb_011931_090 Hb_000405_010--Hb_011931_090 Hb_000432_020 Hb_000432_020 Hb_000405_010--Hb_000432_020 Hb_000522_030 Hb_000522_030 Hb_000405_010--Hb_000522_030 Hb_150516_010 Hb_150516_010 Hb_000405_010--Hb_150516_010 Hb_027917_010 Hb_027917_010 Hb_000405_010--Hb_027917_010 Hb_000923_110--Hb_010367_010 Hb_000923_110--Hb_003868_010 Hb_000466_180 Hb_000466_180 Hb_000923_110--Hb_000466_180 Hb_007167_100 Hb_007167_100 Hb_000923_110--Hb_007167_100 Hb_004445_030--Hb_047923_030 Hb_004445_030--Hb_002576_010 Hb_004052_130 Hb_004052_130 Hb_004445_030--Hb_004052_130 Hb_009355_010 Hb_009355_010 Hb_004445_030--Hb_009355_010 Hb_144838_010 Hb_144838_010 Hb_004445_030--Hb_144838_010 Hb_002576_010--Hb_047923_030 Hb_134377_070 Hb_134377_070 Hb_002576_010--Hb_134377_070 Hb_000142_090 Hb_000142_090 Hb_002576_010--Hb_000142_090 Hb_181013_010 Hb_181013_010 Hb_002576_010--Hb_181013_010 Hb_005432_020 Hb_005432_020 Hb_002576_010--Hb_005432_020 Hb_159124_010 Hb_159124_010 Hb_002576_010--Hb_159124_010 Hb_047923_030--Hb_134377_070 Hb_047923_030--Hb_000142_090 Hb_047923_030--Hb_181013_010 Hb_047923_030--Hb_159124_010 Hb_047923_030--Hb_005432_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.012829 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0221986 0.231237

CAGE analysis