Hb_054127_040

Information

Type -
Description -
Location Contig54127: 27785-31651
Sequence    

Annotation

kegg
ID rcu:RCOM_0466960
description 2-hydroxyphytanoyl-CoA lyase, putative (EC:4.1.1.8)
nr
ID XP_012078036.1
description PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
swissprot
ID Q9LF46
description 2-hydroxyacyl-CoA lyase OS=Arabidopsis thaliana GN=HACL PE=1 SV=1
trembl
ID A0A067KA75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13058 PE=3 SV=1
Gene Ontology
ID GO:0005829
description 2-hydroxyacyl- lyase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47873: 27667-31602
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054127_040 0.0 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
2 Hb_034299_060 0.0860821348 transcription factor TF Family: Orphans PREDICTED: two-component response regulator ARR5 [Jatropha curcas]
3 Hb_010172_070 0.0955161848 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
4 Hb_000429_170 0.1025734346 - - PREDICTED: adenylosuccinate synthetase 2, chloroplastic [Jatropha curcas]
5 Hb_001257_080 0.1114322217 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000056_340 0.1161362216 - - 60S ribosomal protein L34A [Hevea brasiliensis]
7 Hb_044662_070 0.1177774204 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
8 Hb_002205_080 0.1189617715 - - 40S ribosomal protein S26, putative [Ricinus communis]
9 Hb_002163_020 0.1218025146 transcription factor TF Family: PHD PREDICTED: BAH and coiled-coil domain-containing protein 1-like [Jatropha curcas]
10 Hb_000634_100 0.1226919687 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
11 Hb_029866_060 0.12328075 - - hypothetical protein PRUPE_ppa012628mg [Prunus persica]
12 Hb_011224_110 0.1234005897 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
13 Hb_000146_020 0.1252347307 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
14 Hb_000023_230 0.1253901149 - - PREDICTED: uncharacterized protein LOC105637526 [Jatropha curcas]
15 Hb_001199_050 0.1261716539 - - PREDICTED: DNA-3-methyladenine glycosylase-like isoform X1 [Jatropha curcas]
16 Hb_007924_020 0.1266342658 - - PREDICTED: chaperonin CPN60-like 2, mitochondrial isoform X2 [Jatropha curcas]
17 Hb_000834_270 0.1288250402 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
18 Hb_001722_100 0.1288846566 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002540_030 0.1289082965 - - hypothetical protein 32 [Hevea brasiliensis]
20 Hb_000200_100 0.1295408307 - - hypothetical protein POPTR_0013s14810g, partial [Populus trichocarpa]

Gene co-expression network

sample Hb_054127_040 Hb_054127_040 Hb_034299_060 Hb_034299_060 Hb_054127_040--Hb_034299_060 Hb_010172_070 Hb_010172_070 Hb_054127_040--Hb_010172_070 Hb_000429_170 Hb_000429_170 Hb_054127_040--Hb_000429_170 Hb_001257_080 Hb_001257_080 Hb_054127_040--Hb_001257_080 Hb_000056_340 Hb_000056_340 Hb_054127_040--Hb_000056_340 Hb_044662_070 Hb_044662_070 Hb_054127_040--Hb_044662_070 Hb_034299_060--Hb_000429_170 Hb_003151_050 Hb_003151_050 Hb_034299_060--Hb_003151_050 Hb_006824_020 Hb_006824_020 Hb_034299_060--Hb_006824_020 Hb_000622_040 Hb_000622_040 Hb_034299_060--Hb_000622_040 Hb_005357_150 Hb_005357_150 Hb_034299_060--Hb_005357_150 Hb_007479_020 Hb_007479_020 Hb_010172_070--Hb_007479_020 Hb_001912_010 Hb_001912_010 Hb_010172_070--Hb_001912_010 Hb_001722_100 Hb_001722_100 Hb_010172_070--Hb_001722_100 Hb_014720_080 Hb_014720_080 Hb_010172_070--Hb_014720_080 Hb_000922_270 Hb_000922_270 Hb_010172_070--Hb_000922_270 Hb_010172_070--Hb_001257_080 Hb_002253_070 Hb_002253_070 Hb_000429_170--Hb_002253_070 Hb_007924_020 Hb_007924_020 Hb_000429_170--Hb_007924_020 Hb_000429_170--Hb_000622_040 Hb_000429_170--Hb_003151_050 Hb_000834_270 Hb_000834_270 Hb_000429_170--Hb_000834_270 Hb_002205_080 Hb_002205_080 Hb_001257_080--Hb_002205_080 Hb_007741_050 Hb_007741_050 Hb_001257_080--Hb_007741_050 Hb_007101_150 Hb_007101_150 Hb_001257_080--Hb_007101_150 Hb_002529_100 Hb_002529_100 Hb_001257_080--Hb_002529_100 Hb_022250_040 Hb_022250_040 Hb_001257_080--Hb_022250_040 Hb_000798_030 Hb_000798_030 Hb_001257_080--Hb_000798_030 Hb_000056_340--Hb_007101_150 Hb_003018_200 Hb_003018_200 Hb_000056_340--Hb_003018_200 Hb_007672_010 Hb_007672_010 Hb_000056_340--Hb_007672_010 Hb_001828_090 Hb_001828_090 Hb_000056_340--Hb_001828_090 Hb_024835_030 Hb_024835_030 Hb_000056_340--Hb_024835_030 Hb_004012_010 Hb_004012_010 Hb_000056_340--Hb_004012_010 Hb_023386_080 Hb_023386_080 Hb_044662_070--Hb_023386_080 Hb_004108_230 Hb_004108_230 Hb_044662_070--Hb_004108_230 Hb_044662_070--Hb_007924_020 Hb_003175_040 Hb_003175_040 Hb_044662_070--Hb_003175_040 Hb_003408_020 Hb_003408_020 Hb_044662_070--Hb_003408_020 Hb_003376_120 Hb_003376_120 Hb_044662_070--Hb_003376_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.03416 1.51877 1.32311 0.945483 3.38972 1.02017
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.66961 5.34337 4.50394 1.61251 0.633087

CAGE analysis