Hb_054127_060

Information

Type -
Description -
Location Contig54127: 39849-42170
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09330g
description POPTRDRAFT_198288; hypothetical protein
nr
ID XP_002305844.2
description hypothetical protein POPTR_0004s09330g [Populus trichocarpa]
swissprot
ID Q9LS09
description Histone chaperone ASF1B OS=Arabidopsis thaliana GN=ASF1B PE=1 SV=1
trembl
ID B9H343
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s09330g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47874: 41596-42091
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054127_060 0.0 - - hypothetical protein POPTR_0004s09330g [Populus trichocarpa]
2 Hb_000733_080 0.2092162257 - - PREDICTED: uncharacterized protein LOC105646960 [Jatropha curcas]
3 Hb_000483_400 0.2113114145 - - PREDICTED: succinate dehydrogenase assembly factor 1, mitochondrial [Jatropha curcas]
4 Hb_000066_090 0.2118690308 - - PREDICTED: pyruvate kinase, cytosolic isozyme-like [Jatropha curcas]
5 Hb_000069_740 0.2147560988 - - Esterase precursor, putative [Ricinus communis]
6 Hb_002272_280 0.2170415531 - - phosphoglycerate mutase, putative [Ricinus communis]
7 Hb_001163_040 0.2189548253 - - Cytochrome-c oxidases,electron carriers [Theobroma cacao]
8 Hb_006452_110 0.2207114032 - - Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative [Ricinus communis]
9 Hb_012340_050 0.2207906099 - - PREDICTED: actin-related protein 5 [Jatropha curcas]
10 Hb_162547_010 0.224680347 - - -
11 Hb_000240_120 0.2306902142 - - ras-related protein Rab-5B [Reticulomyxa filosa]
12 Hb_000671_120 0.2319897975 - - hypothetical protein JCGZ_23777 [Jatropha curcas]
13 Hb_000792_090 0.2323817188 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
14 Hb_000445_170 0.232427969 - - PREDICTED: probable methyltransferase PMT10 [Jatropha curcas]
15 Hb_000365_250 0.233312016 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001205_160 0.2336623035 - - hypothetical protein POPTR_0005s12560g [Populus trichocarpa]
17 Hb_001233_020 0.2339578944 - - hypothetical protein JCGZ_04109 [Jatropha curcas]
18 Hb_000342_160 0.2452663463 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
19 Hb_003894_080 0.2464942692 - - PREDICTED: protein cornichon homolog 4 [Vitis vinifera]
20 Hb_000264_360 0.2468187068 - - hypothetical protein JCGZ_21443 [Jatropha curcas]

Gene co-expression network

sample Hb_054127_060 Hb_054127_060 Hb_000733_080 Hb_000733_080 Hb_054127_060--Hb_000733_080 Hb_000483_400 Hb_000483_400 Hb_054127_060--Hb_000483_400 Hb_000066_090 Hb_000066_090 Hb_054127_060--Hb_000066_090 Hb_000069_740 Hb_000069_740 Hb_054127_060--Hb_000069_740 Hb_002272_280 Hb_002272_280 Hb_054127_060--Hb_002272_280 Hb_001163_040 Hb_001163_040 Hb_054127_060--Hb_001163_040 Hb_001252_210 Hb_001252_210 Hb_000733_080--Hb_001252_210 Hb_006452_110 Hb_006452_110 Hb_000733_080--Hb_006452_110 Hb_019762_020 Hb_019762_020 Hb_000733_080--Hb_019762_020 Hb_000023_290 Hb_000023_290 Hb_000733_080--Hb_000023_290 Hb_003894_080 Hb_003894_080 Hb_000733_080--Hb_003894_080 Hb_003929_270 Hb_003929_270 Hb_000733_080--Hb_003929_270 Hb_000796_020 Hb_000796_020 Hb_000483_400--Hb_000796_020 Hb_000240_120 Hb_000240_120 Hb_000483_400--Hb_000240_120 Hb_175933_010 Hb_175933_010 Hb_000483_400--Hb_175933_010 Hb_004453_070 Hb_004453_070 Hb_000483_400--Hb_004453_070 Hb_000683_100 Hb_000683_100 Hb_000483_400--Hb_000683_100 Hb_000217_020 Hb_000217_020 Hb_000483_400--Hb_000217_020 Hb_000365_250 Hb_000365_250 Hb_000066_090--Hb_000365_250 Hb_000329_110 Hb_000329_110 Hb_000066_090--Hb_000329_110 Hb_000406_080 Hb_000406_080 Hb_000066_090--Hb_000406_080 Hb_000140_380 Hb_000140_380 Hb_000066_090--Hb_000140_380 Hb_007926_050 Hb_007926_050 Hb_000066_090--Hb_007926_050 Hb_000359_090 Hb_000359_090 Hb_000066_090--Hb_000359_090 Hb_000069_740--Hb_000733_080 Hb_000445_170 Hb_000445_170 Hb_000069_740--Hb_000445_170 Hb_000521_160 Hb_000521_160 Hb_000069_740--Hb_000521_160 Hb_000004_010 Hb_000004_010 Hb_000069_740--Hb_000004_010 Hb_000069_740--Hb_003929_270 Hb_000826_090 Hb_000826_090 Hb_000069_740--Hb_000826_090 Hb_009646_040 Hb_009646_040 Hb_002272_280--Hb_009646_040 Hb_011377_050 Hb_011377_050 Hb_002272_280--Hb_011377_050 Hb_000019_070 Hb_000019_070 Hb_002272_280--Hb_000019_070 Hb_000638_170 Hb_000638_170 Hb_002272_280--Hb_000638_170 Hb_000161_060 Hb_000161_060 Hb_002272_280--Hb_000161_060 Hb_000521_130 Hb_000521_130 Hb_002272_280--Hb_000521_130 Hb_011512_050 Hb_011512_050 Hb_001163_040--Hb_011512_050 Hb_002078_260 Hb_002078_260 Hb_001163_040--Hb_002078_260 Hb_001220_010 Hb_001220_010 Hb_001163_040--Hb_001220_010 Hb_001163_040--Hb_006452_110 Hb_007894_230 Hb_007894_230 Hb_001163_040--Hb_007894_230 Hb_080601_020 Hb_080601_020 Hb_001163_040--Hb_080601_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.537907 0.207715 0.202012 3.56113 0.771533 0.512948
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.09968 1.51273 1.30722 0.289855 0

CAGE analysis