Hb_054144_010

Information

Type -
Description -
Location Contig54144: 326-1481
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13360g
description POPTRDRAFT_876512; hypothetical protein
nr
ID XP_002312977.2
description hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
swissprot
ID Q4R6S5
description Dual specificity tyrosine-phosphorylation-regulated kinase 3 OS=Macaca fascicularis GN=DYRK3 PE=2 SV=1
trembl
ID B9HR94
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13360g PE=4 SV=2
Gene Ontology
ID GO:0016301
description protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054144_010 0.0 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
2 Hb_003096_020 0.1559610668 - - -
3 Hb_002185_010 0.2982349755 - - PREDICTED: uncharacterized protein LOC105795658 [Gossypium raimondii]
4 Hb_000826_060 0.308259458 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
5 Hb_002631_220 0.3230176987 - - Patellin-4, putative [Ricinus communis]
6 Hb_005928_050 0.3292709317 - - glutathione reductase [Hevea brasiliensis]
7 Hb_005273_020 0.3412630249 - - -
8 Hb_003225_030 0.351954587 - - Pectinesterase-4 precursor, putative [Ricinus communis]
9 Hb_089140_010 0.3526739463 - - -
10 Hb_100105_010 0.3532792415 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
11 Hb_003902_060 0.3535609081 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
12 Hb_158253_010 0.3552274593 - - -
13 Hb_002232_280 0.3591329393 - - PREDICTED: pleiotropic drug resistance protein 1-like isoform X6 [Jatropha curcas]
14 Hb_076038_010 0.3621515856 - - conserved hypothetical protein [Ricinus communis]
15 Hb_010913_010 0.3631023248 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_033363_060 0.3640902789 transcription factor TF Family: RAV DNA-binding protein RAV1, putative [Ricinus communis]
17 Hb_161023_010 0.3641117656 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
18 Hb_036227_010 0.3698672049 - - -
19 Hb_007592_020 0.3720441823 - - acyltransferase, putative [Ricinus communis]
20 Hb_002272_010 0.3735624561 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_054144_010 Hb_054144_010 Hb_003096_020 Hb_003096_020 Hb_054144_010--Hb_003096_020 Hb_002185_010 Hb_002185_010 Hb_054144_010--Hb_002185_010 Hb_000826_060 Hb_000826_060 Hb_054144_010--Hb_000826_060 Hb_002631_220 Hb_002631_220 Hb_054144_010--Hb_002631_220 Hb_005928_050 Hb_005928_050 Hb_054144_010--Hb_005928_050 Hb_005273_020 Hb_005273_020 Hb_054144_010--Hb_005273_020 Hb_003096_020--Hb_002631_220 Hb_161023_010 Hb_161023_010 Hb_003096_020--Hb_161023_010 Hb_188411_010 Hb_188411_010 Hb_003096_020--Hb_188411_010 Hb_007592_020 Hb_007592_020 Hb_003096_020--Hb_007592_020 Hb_160233_020 Hb_160233_020 Hb_003096_020--Hb_160233_020 Hb_000457_040 Hb_000457_040 Hb_002185_010--Hb_000457_040 Hb_161994_020 Hb_161994_020 Hb_002185_010--Hb_161994_020 Hb_002185_010--Hb_003096_020 Hb_001935_210 Hb_001935_210 Hb_002185_010--Hb_001935_210 Hb_107500_010 Hb_107500_010 Hb_002185_010--Hb_107500_010 Hb_002232_280 Hb_002232_280 Hb_000826_060--Hb_002232_280 Hb_089140_010 Hb_089140_010 Hb_000826_060--Hb_089140_010 Hb_000627_100 Hb_000627_100 Hb_000826_060--Hb_000627_100 Hb_008096_040 Hb_008096_040 Hb_000826_060--Hb_008096_040 Hb_079733_010 Hb_079733_010 Hb_000826_060--Hb_079733_010 Hb_001277_190 Hb_001277_190 Hb_000826_060--Hb_001277_190 Hb_001214_150 Hb_001214_150 Hb_002631_220--Hb_001214_150 Hb_004945_020 Hb_004945_020 Hb_002631_220--Hb_004945_020 Hb_002447_160 Hb_002447_160 Hb_002631_220--Hb_002447_160 Hb_002631_220--Hb_089140_010 Hb_002631_220--Hb_007592_020 Hb_126648_010 Hb_126648_010 Hb_002631_220--Hb_126648_010 Hb_155541_010 Hb_155541_010 Hb_005928_050--Hb_155541_010 Hb_006907_100 Hb_006907_100 Hb_005928_050--Hb_006907_100 Hb_000122_050 Hb_000122_050 Hb_005928_050--Hb_000122_050 Hb_000302_130 Hb_000302_130 Hb_005928_050--Hb_000302_130 Hb_001269_290 Hb_001269_290 Hb_005928_050--Hb_001269_290 Hb_011485_090 Hb_011485_090 Hb_005928_050--Hb_011485_090 Hb_100105_010 Hb_100105_010 Hb_005273_020--Hb_100105_010 Hb_089140_120 Hb_089140_120 Hb_005273_020--Hb_089140_120 Hb_003902_060 Hb_003902_060 Hb_005273_020--Hb_003902_060 Hb_001711_010 Hb_001711_010 Hb_005273_020--Hb_001711_010 Hb_003891_070 Hb_003891_070 Hb_005273_020--Hb_003891_070 Hb_008232_030 Hb_008232_030 Hb_005273_020--Hb_008232_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125429 0.10808 0.0518436 0.0875989 0.0632941 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.115677 0 0 0

CAGE analysis