Hb_054165_010

Information

Type -
Description -
Location Contig54165: 52-852
Sequence    

Annotation

kegg
ID pop:POPTR_0014s00536g
description hypothetical protein
nr
ID XP_012090562.1
description PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
swissprot
ID Q7XBQ9
description Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1
trembl
ID A0A067LBZ6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01203 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054165_010 0.0 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
2 Hb_001002_020 0.0166159992 - - ATP binding protein, putative [Ricinus communis]
3 Hb_005928_010 0.041172084 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
4 Hb_000277_030 0.0434745005 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
5 Hb_046610_010 0.0688439265 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_006083_010 0.0733082859 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
7 Hb_136973_020 0.0739606944 - - -
8 Hb_003847_090 0.0758064966 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
9 Hb_064885_010 0.0855073427 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
10 Hb_173029_010 0.0986886069 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_001410_040 0.1015440879 - - Protein ABIL2, putative [Ricinus communis]
12 Hb_000248_080 0.1028466854 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
13 Hb_004788_030 0.106940372 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
14 Hb_009385_010 0.1074140313 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
15 Hb_021142_030 0.1115698151 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
16 Hb_164577_010 0.1153215994 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
17 Hb_116103_010 0.1157814886 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
18 Hb_000904_110 0.1188207689 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
19 Hb_000668_220 0.1244957618 - - PREDICTED: uncharacterized protein LOC105119281 [Populus euphratica]
20 Hb_008821_030 0.1245167116 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]

Gene co-expression network

sample Hb_054165_010 Hb_054165_010 Hb_001002_020 Hb_001002_020 Hb_054165_010--Hb_001002_020 Hb_005928_010 Hb_005928_010 Hb_054165_010--Hb_005928_010 Hb_000277_030 Hb_000277_030 Hb_054165_010--Hb_000277_030 Hb_046610_010 Hb_046610_010 Hb_054165_010--Hb_046610_010 Hb_006083_010 Hb_006083_010 Hb_054165_010--Hb_006083_010 Hb_136973_020 Hb_136973_020 Hb_054165_010--Hb_136973_020 Hb_001002_020--Hb_005928_010 Hb_001002_020--Hb_000277_030 Hb_001002_020--Hb_136973_020 Hb_003847_090 Hb_003847_090 Hb_001002_020--Hb_003847_090 Hb_001002_020--Hb_006083_010 Hb_005928_010--Hb_000277_030 Hb_005928_010--Hb_136973_020 Hb_000248_080 Hb_000248_080 Hb_005928_010--Hb_000248_080 Hb_005928_010--Hb_003847_090 Hb_000277_030--Hb_136973_020 Hb_000277_030--Hb_003847_090 Hb_000277_030--Hb_006083_010 Hb_164577_010 Hb_164577_010 Hb_046610_010--Hb_164577_010 Hb_000997_130 Hb_000997_130 Hb_046610_010--Hb_000997_130 Hb_046610_010--Hb_001002_020 Hb_007546_010 Hb_007546_010 Hb_046610_010--Hb_007546_010 Hb_021142_030 Hb_021142_030 Hb_046610_010--Hb_021142_030 Hb_001410_040 Hb_001410_040 Hb_006083_010--Hb_001410_040 Hb_004788_030 Hb_004788_030 Hb_006083_010--Hb_004788_030 Hb_009385_010 Hb_009385_010 Hb_006083_010--Hb_009385_010 Hb_006083_010--Hb_003847_090 Hb_008821_030 Hb_008821_030 Hb_006083_010--Hb_008821_030 Hb_006083_010--Hb_021142_030 Hb_136973_020--Hb_000248_080 Hb_137862_020 Hb_137862_020 Hb_136973_020--Hb_137862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0485266 0.0721578 0.0479005 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis