Hb_054232_020

Information

Type -
Description -
Location Contig54232: 4926-5876
Sequence    

Annotation

kegg
ID rcu:RCOM_0052660
description Potassium channel SKOR, putative (EC:3.1.1.5)
nr
ID XP_002533481.1
description Potassium channel SKOR, putative [Ricinus communis]
swissprot
ID Q9M8S6
description Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1
trembl
ID B9T5G2
description Potassium channel SKOR, putative OS=Ricinus communis GN=RCOM_0052660 PE=4 SV=1
Gene Ontology
ID GO:0004622
description potassium channel skor isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054232_020 0.0 - - Potassium channel SKOR, putative [Ricinus communis]
2 Hb_002609_290 0.1308521984 - - PREDICTED: non-specific phospholipase C1 [Jatropha curcas]
3 Hb_007193_030 0.1326229169 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
4 Hb_004218_080 0.1372595957 - - PREDICTED: uncharacterized protein LOC105631207 [Jatropha curcas]
5 Hb_005539_100 0.1379339124 - - nucleoside transporter, putative [Ricinus communis]
6 Hb_011381_070 0.1471428869 transcription factor TF Family: DBB PREDICTED: zinc finger protein CONSTANS-LIKE 4 [Jatropha curcas]
7 Hb_002809_120 0.1481535014 - - Uncharacterized protein TCM_031281 [Theobroma cacao]
8 Hb_000366_050 0.1483233562 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
9 Hb_001158_120 0.1499828268 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
10 Hb_003905_040 0.1532162835 - - PREDICTED: heptahelical transmembrane protein 2 [Jatropha curcas]
11 Hb_011287_060 0.1548369887 - - -
12 Hb_046109_010 0.1551778104 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
13 Hb_007416_170 0.1577971197 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 17 [Jatropha curcas]
14 Hb_003029_010 0.1595463389 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
15 Hb_012799_040 0.161878278 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
16 Hb_183025_010 0.1626887326 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
17 Hb_002010_080 0.1628830754 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
18 Hb_002997_110 0.1641649562 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 22 isoform X1 [Jatropha curcas]
19 Hb_073171_050 0.1651922973 transcription factor TF Family: MYB-related PREDICTED: myb-like protein H [Jatropha curcas]
20 Hb_007483_080 0.1652125577 - - hypothetical protein RCOM_0634810 [Ricinus communis]

Gene co-expression network

sample Hb_054232_020 Hb_054232_020 Hb_002609_290 Hb_002609_290 Hb_054232_020--Hb_002609_290 Hb_007193_030 Hb_007193_030 Hb_054232_020--Hb_007193_030 Hb_004218_080 Hb_004218_080 Hb_054232_020--Hb_004218_080 Hb_005539_100 Hb_005539_100 Hb_054232_020--Hb_005539_100 Hb_011381_070 Hb_011381_070 Hb_054232_020--Hb_011381_070 Hb_002809_120 Hb_002809_120 Hb_054232_020--Hb_002809_120 Hb_002609_290--Hb_011381_070 Hb_000366_050 Hb_000366_050 Hb_002609_290--Hb_000366_050 Hb_001158_120 Hb_001158_120 Hb_002609_290--Hb_001158_120 Hb_010812_060 Hb_010812_060 Hb_002609_290--Hb_010812_060 Hb_002997_110 Hb_002997_110 Hb_002609_290--Hb_002997_110 Hb_001627_010 Hb_001627_010 Hb_002609_290--Hb_001627_010 Hb_007193_030--Hb_004218_080 Hb_001369_020 Hb_001369_020 Hb_007193_030--Hb_001369_020 Hb_001623_410 Hb_001623_410 Hb_007193_030--Hb_001623_410 Hb_073171_050 Hb_073171_050 Hb_007193_030--Hb_073171_050 Hb_005725_280 Hb_005725_280 Hb_007193_030--Hb_005725_280 Hb_003905_040 Hb_003905_040 Hb_007193_030--Hb_003905_040 Hb_004218_080--Hb_005725_280 Hb_002498_250 Hb_002498_250 Hb_004218_080--Hb_002498_250 Hb_000156_080 Hb_000156_080 Hb_004218_080--Hb_000156_080 Hb_000365_340 Hb_000365_340 Hb_004218_080--Hb_000365_340 Hb_003106_240 Hb_003106_240 Hb_004218_080--Hb_003106_240 Hb_172676_010 Hb_172676_010 Hb_005539_100--Hb_172676_010 Hb_005539_100--Hb_011381_070 Hb_005539_100--Hb_001158_120 Hb_005539_100--Hb_000366_050 Hb_002073_020 Hb_002073_020 Hb_005539_100--Hb_002073_020 Hb_000369_070 Hb_000369_070 Hb_005539_100--Hb_000369_070 Hb_011381_070--Hb_000366_050 Hb_011381_070--Hb_001158_120 Hb_000035_490 Hb_000035_490 Hb_011381_070--Hb_000035_490 Hb_001294_040 Hb_001294_040 Hb_011381_070--Hb_001294_040 Hb_132840_020 Hb_132840_020 Hb_011381_070--Hb_132840_020 Hb_001357_060 Hb_001357_060 Hb_002809_120--Hb_001357_060 Hb_000260_480 Hb_000260_480 Hb_002809_120--Hb_000260_480 Hb_004907_070 Hb_004907_070 Hb_002809_120--Hb_004907_070 Hb_000500_230 Hb_000500_230 Hb_002809_120--Hb_000500_230 Hb_007747_100 Hb_007747_100 Hb_002809_120--Hb_007747_100 Hb_005271_180 Hb_005271_180 Hb_002809_120--Hb_005271_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.250892 8.19343 6.15608 3.34869 0.858151 0.148004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.128715 0 0 1.34214 4.1824

CAGE analysis