Hb_054316_010

Information

Type -
Description -
Location Contig54316: 1-1191
Sequence    

Annotation

kegg
ID pop:POPTR_0014s05270g
description hypothetical protein
nr
ID XP_012083829.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID A0A067K8H1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14346 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47881: 1-325
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054316_010 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_000134_190 0.1021195305 - - hypothetical protein JCGZ_16725 [Jatropha curcas]
3 Hb_023582_030 0.1046132941 - - WD-repeat protein, putative [Ricinus communis]
4 Hb_004686_040 0.108982409 - - hypothetical protein POPTR_0016s05690g [Populus trichocarpa]
5 Hb_186458_010 0.1106286718 desease resistance Gene Name: AAA_29 PREDICTED: ABC transporter G family member 15-like [Populus euphratica]
6 Hb_000742_070 0.1109396045 - - PREDICTED: monoglyceride lipase isoform X2 [Bubalus bubalis]
7 Hb_017110_030 0.1110772078 - - PREDICTED: subtilisin-like protease SBT5.4 [Jatropha curcas]
8 Hb_083963_010 0.1180835822 - - PREDICTED: probable carboxylesterase 8 [Jatropha curcas]
9 Hb_000109_200 0.1181403708 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
10 Hb_004313_010 0.1230195019 - - PREDICTED: patatin-like protein 1 [Prunus mume]
11 Hb_000020_170 0.1236124824 - - PREDICTED: aspartic proteinase PCS1 [Jatropha curcas]
12 Hb_031012_030 0.1239622093 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT5-like [Populus euphratica]
13 Hb_000933_030 0.1258814549 transcription factor TF Family: ERF conserved hypothetical protein [Ricinus communis]
14 Hb_029883_010 0.1267326039 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
15 Hb_002276_080 0.1278015715 - - Protein bem46, putative [Ricinus communis]
16 Hb_004525_090 0.1299022505 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
17 Hb_000815_050 0.1305882405 - - PREDICTED: expansin-A1 [Populus euphratica]
18 Hb_011004_070 0.1369468721 - - hypothetical protein RCOM_1494490 [Ricinus communis]
19 Hb_012653_050 0.1396929142 - - hypothetical protein RCOM_0460020 [Ricinus communis]
20 Hb_004899_230 0.1444154495 - - Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]

Gene co-expression network

sample Hb_054316_010 Hb_054316_010 Hb_000134_190 Hb_000134_190 Hb_054316_010--Hb_000134_190 Hb_023582_030 Hb_023582_030 Hb_054316_010--Hb_023582_030 Hb_004686_040 Hb_004686_040 Hb_054316_010--Hb_004686_040 Hb_186458_010 Hb_186458_010 Hb_054316_010--Hb_186458_010 Hb_000742_070 Hb_000742_070 Hb_054316_010--Hb_000742_070 Hb_017110_030 Hb_017110_030 Hb_054316_010--Hb_017110_030 Hb_000134_190--Hb_023582_030 Hb_000134_190--Hb_004686_040 Hb_000134_190--Hb_000742_070 Hb_000134_190--Hb_017110_030 Hb_000134_190--Hb_186458_010 Hb_000933_030 Hb_000933_030 Hb_000134_190--Hb_000933_030 Hb_023582_030--Hb_000742_070 Hb_023582_030--Hb_017110_030 Hb_023582_030--Hb_000933_030 Hb_023582_030--Hb_004686_040 Hb_023582_030--Hb_186458_010 Hb_000020_170 Hb_000020_170 Hb_004686_040--Hb_000020_170 Hb_029883_010 Hb_029883_010 Hb_004686_040--Hb_029883_010 Hb_000109_200 Hb_000109_200 Hb_004686_040--Hb_000109_200 Hb_004686_040--Hb_000742_070 Hb_186458_010--Hb_017110_030 Hb_004313_010 Hb_004313_010 Hb_186458_010--Hb_004313_010 Hb_083963_010 Hb_083963_010 Hb_186458_010--Hb_083963_010 Hb_031012_030 Hb_031012_030 Hb_186458_010--Hb_031012_030 Hb_186458_010--Hb_000742_070 Hb_000742_070--Hb_017110_030 Hb_000742_070--Hb_000933_030 Hb_000742_070--Hb_083963_010 Hb_017110_030--Hb_083963_010 Hb_017110_030--Hb_000933_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.235726 0.446551 0.0167914 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.133232

CAGE analysis