Hb_054328_010

Information

Type -
Description -
Location Contig54328: 1055-5656
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09820g
description POPTRDRAFT_780498; hypothetical protein
nr
ID XP_002325496.2
description hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IQ77
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0019s09820g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054328_010 0.0 - - hypothetical protein POPTR_0019s09820g [Populus trichocarpa]
2 Hb_000589_400 0.1819419386 - - ESC, putative [Ricinus communis]
3 Hb_005702_030 0.2035723369 - - PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
4 Hb_000703_240 0.2125896778 - - -
5 Hb_000640_300 0.2330472771 transcription factor TF Family: WRKY WRKY1 [Hevea brasiliensis]
6 Hb_001529_050 0.2404715361 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
7 Hb_000215_410 0.2406929074 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
8 Hb_001117_070 0.2442044988 - - 30S ribosomal protein S19, putative [Ricinus communis]
9 Hb_017434_060 0.2484416265 - - PREDICTED: 60S ribosomal export protein NMD3 [Jatropha curcas]
10 Hb_000050_090 0.2550125664 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
11 Hb_000457_170 0.2559156024 - - PREDICTED: uncharacterized protein LOC105633066 [Jatropha curcas]
12 Hb_000243_140 0.257159143 transcription factor TF Family: SRS Lateral root primordium protein-related, putative [Theobroma cacao]
13 Hb_004032_420 0.2576567342 - - PREDICTED: AT-hook motif nuclear-localized protein 25-like [Jatropha curcas]
14 Hb_000152_020 0.2586139606 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
15 Hb_026698_010 0.2648911818 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
16 Hb_004788_040 0.2719256328 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_004738_020 0.2743404468 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000836_120 0.2756372896 - - syntaxin, putative [Ricinus communis]
19 Hb_164945_040 0.2781155139 - - PREDICTED: uncharacterized protein LOC105628261 [Jatropha curcas]
20 Hb_001269_690 0.278581293 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_054328_010 Hb_054328_010 Hb_000589_400 Hb_000589_400 Hb_054328_010--Hb_000589_400 Hb_005702_030 Hb_005702_030 Hb_054328_010--Hb_005702_030 Hb_000703_240 Hb_000703_240 Hb_054328_010--Hb_000703_240 Hb_000640_300 Hb_000640_300 Hb_054328_010--Hb_000640_300 Hb_001529_050 Hb_001529_050 Hb_054328_010--Hb_001529_050 Hb_000215_410 Hb_000215_410 Hb_054328_010--Hb_000215_410 Hb_000589_400--Hb_000640_300 Hb_000589_400--Hb_000703_240 Hb_000243_140 Hb_000243_140 Hb_000589_400--Hb_000243_140 Hb_026698_010 Hb_026698_010 Hb_000589_400--Hb_026698_010 Hb_007451_020 Hb_007451_020 Hb_000589_400--Hb_007451_020 Hb_017434_060 Hb_017434_060 Hb_005702_030--Hb_017434_060 Hb_000050_090 Hb_000050_090 Hb_005702_030--Hb_000050_090 Hb_011344_170 Hb_011344_170 Hb_005702_030--Hb_011344_170 Hb_005702_030--Hb_000703_240 Hb_007307_030 Hb_007307_030 Hb_005702_030--Hb_007307_030 Hb_001769_010 Hb_001769_010 Hb_005702_030--Hb_001769_010 Hb_000497_180 Hb_000497_180 Hb_000703_240--Hb_000497_180 Hb_000703_240--Hb_026698_010 Hb_000703_240--Hb_000050_090 Hb_000703_240--Hb_000640_300 Hb_000640_300--Hb_000243_140 Hb_000640_300--Hb_007451_020 Hb_028872_060 Hb_028872_060 Hb_000640_300--Hb_028872_060 Hb_001150_040 Hb_001150_040 Hb_000640_300--Hb_001150_040 Hb_004230_040 Hb_004230_040 Hb_000640_300--Hb_004230_040 Hb_001269_690 Hb_001269_690 Hb_001529_050--Hb_001269_690 Hb_001104_240 Hb_001104_240 Hb_001529_050--Hb_001104_240 Hb_000140_410 Hb_000140_410 Hb_001529_050--Hb_000140_410 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_003623_070 Hb_003623_070 Hb_001529_050--Hb_003623_070 Hb_000086_660 Hb_000086_660 Hb_001529_050--Hb_000086_660 Hb_002273_050 Hb_002273_050 Hb_000215_410--Hb_002273_050 Hb_129204_060 Hb_129204_060 Hb_000215_410--Hb_129204_060 Hb_002273_080 Hb_002273_080 Hb_000215_410--Hb_002273_080 Hb_002235_240 Hb_002235_240 Hb_000215_410--Hb_002235_240 Hb_000836_120 Hb_000836_120 Hb_000215_410--Hb_000836_120 Hb_000215_410--Hb_001269_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.621545 0.922096 0 0 0.112728 0.101605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.261552 0.205485 0.349234 0.511795 0

CAGE analysis