Hb_054362_010

Information

Type -
Description -
Location Contig54362: 494-787
Sequence    

Annotation

kegg
ID bvg:104899013
description uncharacterized LOC104899013
nr
ID XP_012092718.1
description PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054362_010 0.0 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
2 Hb_127993_010 0.0226282386 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
3 Hb_169574_010 0.0697751738 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
4 Hb_048874_010 0.0723171202 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
5 Hb_005799_040 0.0785841086 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
6 Hb_008246_050 0.0786302023 - - -
7 Hb_162126_010 0.1415286724 - - -
8 Hb_000430_010 0.160683921 - - -
9 Hb_125847_010 0.1766607124 - - -
10 Hb_001956_030 0.1833055137 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Populus euphratica]
11 Hb_005285_010 0.1957343108 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
12 Hb_008779_010 0.2095581311 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
13 Hb_008643_010 0.2212088419 - - hypothetical protein JCGZ_04298 [Jatropha curcas]
14 Hb_089173_010 0.2327028446 - - PREDICTED: uncharacterized protein LOC105636883 [Jatropha curcas]
15 Hb_168311_010 0.2329103436 - - -
16 Hb_006683_010 0.2428332364 - - cell wall invertase [Manihot esculenta]
17 Hb_000139_440 0.2550289813 - - unnamed protein product [Coffea canephora]
18 Hb_003226_290 0.2559407914 - - catalytic, putative [Ricinus communis]
19 Hb_002184_100 0.2648785465 - - hypothetical protein PRUPE_ppa020120mg [Prunus persica]
20 Hb_000590_020 0.2655030204 - - hypothetical protein JCGZ_18748 [Jatropha curcas]

Gene co-expression network

sample Hb_054362_010 Hb_054362_010 Hb_127993_010 Hb_127993_010 Hb_054362_010--Hb_127993_010 Hb_169574_010 Hb_169574_010 Hb_054362_010--Hb_169574_010 Hb_048874_010 Hb_048874_010 Hb_054362_010--Hb_048874_010 Hb_005799_040 Hb_005799_040 Hb_054362_010--Hb_005799_040 Hb_008246_050 Hb_008246_050 Hb_054362_010--Hb_008246_050 Hb_162126_010 Hb_162126_010 Hb_054362_010--Hb_162126_010 Hb_127993_010--Hb_169574_010 Hb_127993_010--Hb_048874_010 Hb_127993_010--Hb_005799_040 Hb_127993_010--Hb_008246_050 Hb_127993_010--Hb_162126_010 Hb_169574_010--Hb_048874_010 Hb_169574_010--Hb_005799_040 Hb_169574_010--Hb_008246_050 Hb_169574_010--Hb_162126_010 Hb_048874_010--Hb_005799_040 Hb_048874_010--Hb_008246_050 Hb_048874_010--Hb_162126_010 Hb_005799_040--Hb_008246_050 Hb_005799_040--Hb_162126_010 Hb_008246_050--Hb_162126_010 Hb_000430_010 Hb_000430_010 Hb_162126_010--Hb_000430_010 Hb_125847_010 Hb_125847_010 Hb_162126_010--Hb_125847_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.436913 0.433364 0

CAGE analysis