Hb_054380_010

Information

Type -
Description -
Location Contig54380: 190-1468
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054380_010 0.0 - - -
2 Hb_153547_010 0.0768614098 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
3 Hb_001009_050 0.0871194486 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
4 Hb_001623_550 0.0964854121 - - PREDICTED: surfeit locus protein 6 [Jatropha curcas]
5 Hb_117950_020 0.1010939627 desease resistance Gene Name: NB-ARC PREDICTED: mitogen-activated protein kinase kinase kinase 1-like [Jatropha curcas]
6 Hb_002284_300 0.1086799868 - - -
7 Hb_000331_480 0.1102699275 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3 [Jatropha curcas]
8 Hb_000035_400 0.1112870284 - - PREDICTED: lariat debranching enzyme-like [Citrus sinensis]
9 Hb_018663_020 0.1124070906 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
10 Hb_002960_060 0.1129988048 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
11 Hb_025048_040 0.1138164182 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
12 Hb_160818_010 0.1150124527 - - -
13 Hb_000805_310 0.1167446102 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
14 Hb_004724_360 0.117492361 - - OTU-like cysteine protease family protein [Populus trichocarpa]
15 Hb_000318_140 0.1185873944 - - Kinase superfamily protein isoform 2 [Theobroma cacao]
16 Hb_002169_010 0.1188022864 - - PREDICTED: la-related protein 6B [Jatropha curcas]
17 Hb_006173_020 0.1220680372 - - PREDICTED: uncharacterized protein At2g39795, mitochondrial-like [Jatropha curcas]
18 Hb_000212_280 0.1237050002 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
19 Hb_000270_450 0.1242482791 - - PREDICTED: uncharacterized protein LOC105167687 [Sesamum indicum]
20 Hb_002820_040 0.1250472667 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_054380_010 Hb_054380_010 Hb_153547_010 Hb_153547_010 Hb_054380_010--Hb_153547_010 Hb_001009_050 Hb_001009_050 Hb_054380_010--Hb_001009_050 Hb_001623_550 Hb_001623_550 Hb_054380_010--Hb_001623_550 Hb_117950_020 Hb_117950_020 Hb_054380_010--Hb_117950_020 Hb_002284_300 Hb_002284_300 Hb_054380_010--Hb_002284_300 Hb_000331_480 Hb_000331_480 Hb_054380_010--Hb_000331_480 Hb_153547_010--Hb_117950_020 Hb_000317_440 Hb_000317_440 Hb_153547_010--Hb_000317_440 Hb_000631_150 Hb_000631_150 Hb_153547_010--Hb_000631_150 Hb_004724_360 Hb_004724_360 Hb_153547_010--Hb_004724_360 Hb_005295_040 Hb_005295_040 Hb_153547_010--Hb_005295_040 Hb_000318_140 Hb_000318_140 Hb_153547_010--Hb_000318_140 Hb_018663_020 Hb_018663_020 Hb_001009_050--Hb_018663_020 Hb_000270_450 Hb_000270_450 Hb_001009_050--Hb_000270_450 Hb_001009_050--Hb_001623_550 Hb_001975_070 Hb_001975_070 Hb_001009_050--Hb_001975_070 Hb_025048_040 Hb_025048_040 Hb_001009_050--Hb_025048_040 Hb_009615_110 Hb_009615_110 Hb_001009_050--Hb_009615_110 Hb_001623_550--Hb_018663_020 Hb_002169_010 Hb_002169_010 Hb_001623_550--Hb_002169_010 Hb_000186_280 Hb_000186_280 Hb_001623_550--Hb_000186_280 Hb_011496_010 Hb_011496_010 Hb_001623_550--Hb_011496_010 Hb_001969_040 Hb_001969_040 Hb_001623_550--Hb_001969_040 Hb_000078_100 Hb_000078_100 Hb_117950_020--Hb_000078_100 Hb_002725_070 Hb_002725_070 Hb_117950_020--Hb_002725_070 Hb_117950_020--Hb_000317_440 Hb_117950_020--Hb_000631_150 Hb_001431_070 Hb_001431_070 Hb_117950_020--Hb_001431_070 Hb_000599_120 Hb_000599_120 Hb_002284_300--Hb_000599_120 Hb_150069_020 Hb_150069_020 Hb_002284_300--Hb_150069_020 Hb_000015_010 Hb_000015_010 Hb_002284_300--Hb_000015_010 Hb_002284_300--Hb_002169_010 Hb_010866_040 Hb_010866_040 Hb_002284_300--Hb_010866_040 Hb_001034_020 Hb_001034_020 Hb_000331_480--Hb_001034_020 Hb_000331_480--Hb_025048_040 Hb_002675_190 Hb_002675_190 Hb_000331_480--Hb_002675_190 Hb_000212_280 Hb_000212_280 Hb_000331_480--Hb_000212_280 Hb_012760_200 Hb_012760_200 Hb_000331_480--Hb_012760_200 Hb_000331_480--Hb_153547_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.5284 2.70011 0.905543 0.292916 9.43147 9.83765
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.64516 3.41853 2.54408 4.3103 1.05418

CAGE analysis