Hb_054436_010

Information

Type -
Description -
Location Contig54436: 3445-5208
Sequence    

Annotation

kegg
ID rcu:RCOM_1685970
description hypothetical protein
nr
ID XP_012077891.1
description PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RC68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1685970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47946: 3373-4489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054436_010 0.0 - - PREDICTED: uncharacterized protein LOC105638666 [Jatropha curcas]
2 Hb_005527_080 0.1924893909 - - hypothetical protein CICLE_v10023951mg, partial [Citrus clementina]
3 Hb_149838_010 0.2005931574 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
4 Hb_114984_010 0.2010827796 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005517_010 0.2075606217 - - Chorismate mutase, chloroplast precursor, putative [Ricinus communis]
6 Hb_002783_020 0.2080653714 - - PREDICTED: synaptotagmin-2 isoform X4 [Jatropha curcas]
7 Hb_004657_090 0.2092976575 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
8 Hb_001916_060 0.2127995724 - - PREDICTED: putative protein FAR1-RELATED SEQUENCE 10 isoform X2 [Jatropha curcas]
9 Hb_091761_010 0.2160888586 - - Rhomboid protein, putative [Ricinus communis]
10 Hb_000260_140 0.2194830285 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
11 Hb_002708_020 0.2196815238 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: uncharacterized protein At5g08430-like isoform X1 [Jatropha curcas]
12 Hb_000258_020 0.2205850455 - - PREDICTED: RING-H2 finger protein ATL74 [Jatropha curcas]
13 Hb_050686_010 0.2219774922 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001195_150 0.2230052197 transcription factor TF Family: MYB-related myb family transcription factor family protein [Populus trichocarpa]
15 Hb_101020_010 0.2256373712 - - -
16 Hb_001916_120 0.2332230445 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
17 Hb_063409_020 0.2358760847 - - Calcium-binding protein, putative [Ricinus communis]
18 Hb_002686_330 0.2362513663 - - PREDICTED: violaxanthin de-epoxidase, chloroplastic [Jatropha curcas]
19 Hb_120662_010 0.2405841417 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
20 Hb_000116_460 0.2406262436 - - PREDICTED: plant intracellular Ras-group-related LRR protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_054436_010 Hb_054436_010 Hb_005527_080 Hb_005527_080 Hb_054436_010--Hb_005527_080 Hb_149838_010 Hb_149838_010 Hb_054436_010--Hb_149838_010 Hb_114984_010 Hb_114984_010 Hb_054436_010--Hb_114984_010 Hb_005517_010 Hb_005517_010 Hb_054436_010--Hb_005517_010 Hb_002783_020 Hb_002783_020 Hb_054436_010--Hb_002783_020 Hb_004657_090 Hb_004657_090 Hb_054436_010--Hb_004657_090 Hb_000260_140 Hb_000260_140 Hb_005527_080--Hb_000260_140 Hb_005527_080--Hb_149838_010 Hb_005527_080--Hb_002783_020 Hb_002708_020 Hb_002708_020 Hb_005527_080--Hb_002708_020 Hb_027402_090 Hb_027402_090 Hb_005527_080--Hb_027402_090 Hb_149838_010--Hb_002783_020 Hb_149838_010--Hb_000260_140 Hb_149838_010--Hb_027402_090 Hb_149838_010--Hb_002708_020 Hb_000265_220 Hb_000265_220 Hb_149838_010--Hb_000265_220 Hb_002686_330 Hb_002686_330 Hb_149838_010--Hb_002686_330 Hb_004920_060 Hb_004920_060 Hb_114984_010--Hb_004920_060 Hb_001731_020 Hb_001731_020 Hb_114984_010--Hb_001731_020 Hb_000997_410 Hb_000997_410 Hb_114984_010--Hb_000997_410 Hb_001489_070 Hb_001489_070 Hb_114984_010--Hb_001489_070 Hb_000116_460 Hb_000116_460 Hb_114984_010--Hb_000116_460 Hb_000021_020 Hb_000021_020 Hb_114984_010--Hb_000021_020 Hb_012107_070 Hb_012107_070 Hb_005517_010--Hb_012107_070 Hb_036693_010 Hb_036693_010 Hb_005517_010--Hb_036693_010 Hb_001916_060 Hb_001916_060 Hb_005517_010--Hb_001916_060 Hb_005155_020 Hb_005155_020 Hb_005517_010--Hb_005155_020 Hb_061466_020 Hb_061466_020 Hb_005517_010--Hb_061466_020 Hb_000997_010 Hb_000997_010 Hb_005517_010--Hb_000997_010 Hb_002783_020--Hb_000260_140 Hb_002783_020--Hb_027402_090 Hb_002783_020--Hb_002708_020 Hb_002783_020--Hb_002686_330 Hb_004176_060 Hb_004176_060 Hb_002783_020--Hb_004176_060 Hb_001508_020 Hb_001508_020 Hb_004657_090--Hb_001508_020 Hb_003376_260 Hb_003376_260 Hb_004657_090--Hb_003376_260 Hb_002681_170 Hb_002681_170 Hb_004657_090--Hb_002681_170 Hb_004374_080 Hb_004374_080 Hb_004657_090--Hb_004374_080 Hb_000091_060 Hb_000091_060 Hb_004657_090--Hb_000091_060 Hb_012404_070 Hb_012404_070 Hb_004657_090--Hb_012404_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.2229 3.43145 7.45688 5.66139 13.6286 8.06106
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.181776 0 0.463709 0.424534 2.03948

CAGE analysis