Hb_054467_010

Information

Type -
Description -
Location Contig54467: 10064-11440
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054467_010 0.0 - - -
2 Hb_007199_010 0.2306522921 - - PREDICTED: protein kinase APK1A, chloroplastic [Nelumbo nucifera]
3 Hb_000460_070 0.2583437889 - - luminal binding protein [Gossypium hirsutum]
4 Hb_010422_070 0.2601181269 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
5 Hb_005167_020 0.2619835888 - - PREDICTED: uncharacterized protein LOC104878039 [Vitis vinifera]
6 Hb_156182_010 0.2732197284 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
7 Hb_007181_020 0.2746441318 - - PREDICTED: uncharacterized protein At4g04980-like [Populus euphratica]
8 Hb_181026_010 0.2766311203 - - Auxin-induced protein 5NG4, putative [Ricinus communis]
9 Hb_052764_100 0.2788044011 - - PREDICTED: beta-galactosidase 8-like [Jatropha curcas]
10 Hb_139848_010 0.2800945005 - - PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Populus euphratica]
11 Hb_069696_010 0.2878277291 - - hypothetical protein POPTR_0003s21190g [Populus trichocarpa]
12 Hb_002918_050 0.290504715 transcription factor TF Family: SBP PREDICTED: mitochondrial arginine transporter BAC1-like isoform X1 [Jatropha curcas]
13 Hb_000828_050 0.2910048932 - - unnamed protein product [Vitis vinifera]
14 Hb_002360_030 0.2925051385 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
15 Hb_000203_140 0.2937527291 - - PREDICTED: peroxisome biogenesis protein 7 [Jatropha curcas]
16 Hb_020437_020 0.2959719223 - - hypothetical protein POPTR_0001s01410g, partial [Populus trichocarpa]
17 Hb_002360_020 0.2960962581 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000116_360 0.2988305662 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
19 Hb_008698_010 0.3023224431 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_005803_040 0.3026464975 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_054467_010 Hb_054467_010 Hb_007199_010 Hb_007199_010 Hb_054467_010--Hb_007199_010 Hb_000460_070 Hb_000460_070 Hb_054467_010--Hb_000460_070 Hb_010422_070 Hb_010422_070 Hb_054467_010--Hb_010422_070 Hb_005167_020 Hb_005167_020 Hb_054467_010--Hb_005167_020 Hb_156182_010 Hb_156182_010 Hb_054467_010--Hb_156182_010 Hb_007181_020 Hb_007181_020 Hb_054467_010--Hb_007181_020 Hb_000828_050 Hb_000828_050 Hb_007199_010--Hb_000828_050 Hb_000061_090 Hb_000061_090 Hb_007199_010--Hb_000061_090 Hb_002291_010 Hb_002291_010 Hb_007199_010--Hb_002291_010 Hb_007199_010--Hb_007181_020 Hb_002774_110 Hb_002774_110 Hb_007199_010--Hb_002774_110 Hb_008698_010 Hb_008698_010 Hb_000460_070--Hb_008698_010 Hb_001229_020 Hb_001229_020 Hb_000460_070--Hb_001229_020 Hb_000683_080 Hb_000683_080 Hb_000460_070--Hb_000683_080 Hb_001621_060 Hb_001621_060 Hb_000460_070--Hb_001621_060 Hb_000189_520 Hb_000189_520 Hb_000460_070--Hb_000189_520 Hb_007054_050 Hb_007054_050 Hb_000460_070--Hb_007054_050 Hb_010422_070--Hb_005167_020 Hb_004317_030 Hb_004317_030 Hb_010422_070--Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_010422_070--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_010422_070--Hb_000510_030 Hb_004128_070 Hb_004128_070 Hb_010422_070--Hb_004128_070 Hb_002045_060 Hb_002045_060 Hb_010422_070--Hb_002045_060 Hb_001863_020 Hb_001863_020 Hb_005167_020--Hb_001863_020 Hb_042202_060 Hb_042202_060 Hb_005167_020--Hb_042202_060 Hb_002876_270 Hb_002876_270 Hb_005167_020--Hb_002876_270 Hb_001399_010 Hb_001399_010 Hb_005167_020--Hb_001399_010 Hb_005167_020--Hb_004128_070 Hb_115940_010 Hb_115940_010 Hb_156182_010--Hb_115940_010 Hb_001366_070 Hb_001366_070 Hb_156182_010--Hb_001366_070 Hb_006738_030 Hb_006738_030 Hb_156182_010--Hb_006738_030 Hb_021888_070 Hb_021888_070 Hb_156182_010--Hb_021888_070 Hb_002918_050 Hb_002918_050 Hb_156182_010--Hb_002918_050 Hb_073866_010 Hb_073866_010 Hb_156182_010--Hb_073866_010 Hb_119504_010 Hb_119504_010 Hb_007181_020--Hb_119504_010 Hb_001780_120 Hb_001780_120 Hb_007181_020--Hb_001780_120 Hb_002078_440 Hb_002078_440 Hb_007181_020--Hb_002078_440 Hb_013893_010 Hb_013893_010 Hb_007181_020--Hb_013893_010 Hb_000856_150 Hb_000856_150 Hb_007181_020--Hb_000856_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0882344 0.0377877 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.172437 0.135549 0.240576 0.27633 0.399797

CAGE analysis