Hb_054541_010

Information

Type -
Description -
Location Contig54541: 178-539
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_012074441.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0005506
description choline chloroplastic isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054541_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
2 Hb_035436_010 0.1377890675 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B-like [Populus euphratica]
3 Hb_177152_010 0.1951465171 - - glycosyl hydrolase family 38 family protein [Populus trichocarpa]
4 Hb_013358_100 0.2035177471 - - unknown [Medicago truncatula]
5 Hb_000422_130 0.2059469723 - - hypothetical protein JCGZ_15217 [Jatropha curcas]
6 Hb_004525_080 0.209502452 - - Sugar transporter ERD6-like 6 [Morus notabilis]
7 Hb_068569_010 0.2097302757 - - -
8 Hb_094437_040 0.2136796076 - - ankyrin repeat family protein, partial [Manihot esculenta]
9 Hb_161294_010 0.2154368581 - - PREDICTED: serine/threonine-protein kinase ppk15 isoform X2 [Jatropha curcas]
10 Hb_017014_020 0.2174857333 - - -
11 Hb_001518_070 0.2193812348 - - conserved hypothetical protein [Ricinus communis]
12 Hb_106596_010 0.2199104409 - - conserved hypothetical protein [Ricinus communis]
13 Hb_017014_010 0.2237205335 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
14 Hb_000053_030 0.2292271277 - - hypothetical protein CISIN_1g0010393mg, partial [Citrus sinensis]
15 Hb_000311_030 0.2315270385 - - hypothetical protein B456_002G227600 [Gossypium raimondii]
16 Hb_011287_040 0.2345821294 - - PREDICTED: OTU domain-containing protein At3g57810-like isoform X1 [Jatropha curcas]
17 Hb_003964_020 0.2346697909 transcription factor TF Family: C2H2 hypothetical protein RCOM_1621120 [Ricinus communis]
18 Hb_169505_010 0.2351878286 - - hypothetical protein JCGZ_04480 [Jatropha curcas]
19 Hb_009083_030 0.2356116819 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
20 Hb_002611_030 0.2378703571 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_054541_010 Hb_054541_010 Hb_035436_010 Hb_035436_010 Hb_054541_010--Hb_035436_010 Hb_177152_010 Hb_177152_010 Hb_054541_010--Hb_177152_010 Hb_013358_100 Hb_013358_100 Hb_054541_010--Hb_013358_100 Hb_000422_130 Hb_000422_130 Hb_054541_010--Hb_000422_130 Hb_004525_080 Hb_004525_080 Hb_054541_010--Hb_004525_080 Hb_068569_010 Hb_068569_010 Hb_054541_010--Hb_068569_010 Hb_035436_010--Hb_013358_100 Hb_010964_020 Hb_010964_020 Hb_035436_010--Hb_010964_020 Hb_035436_010--Hb_177152_010 Hb_178620_010 Hb_178620_010 Hb_035436_010--Hb_178620_010 Hb_025905_020 Hb_025905_020 Hb_035436_010--Hb_025905_020 Hb_177152_010--Hb_013358_100 Hb_145317_010 Hb_145317_010 Hb_177152_010--Hb_145317_010 Hb_169329_010 Hb_169329_010 Hb_177152_010--Hb_169329_010 Hb_065841_010 Hb_065841_010 Hb_177152_010--Hb_065841_010 Hb_177152_010--Hb_178620_010 Hb_013358_100--Hb_068569_010 Hb_040747_010 Hb_040747_010 Hb_013358_100--Hb_040747_010 Hb_004935_080 Hb_004935_080 Hb_013358_100--Hb_004935_080 Hb_013358_100--Hb_065841_010 Hb_000818_100 Hb_000818_100 Hb_000422_130--Hb_000818_100 Hb_003029_060 Hb_003029_060 Hb_000422_130--Hb_003029_060 Hb_003605_040 Hb_003605_040 Hb_000422_130--Hb_003605_040 Hb_187021_010 Hb_187021_010 Hb_000422_130--Hb_187021_010 Hb_003929_190 Hb_003929_190 Hb_000422_130--Hb_003929_190 Hb_001595_040 Hb_001595_040 Hb_000422_130--Hb_001595_040 Hb_066514_010 Hb_066514_010 Hb_004525_080--Hb_066514_010 Hb_007575_090 Hb_007575_090 Hb_004525_080--Hb_007575_090 Hb_002900_100 Hb_002900_100 Hb_004525_080--Hb_002900_100 Hb_001486_050 Hb_001486_050 Hb_004525_080--Hb_001486_050 Hb_007441_090 Hb_007441_090 Hb_004525_080--Hb_007441_090 Hb_004525_080--Hb_177152_010 Hb_068569_010--Hb_010964_020 Hb_068569_010--Hb_178620_010 Hb_000053_030 Hb_000053_030 Hb_068569_010--Hb_000053_030 Hb_068569_010--Hb_065841_010 Hb_033385_010 Hb_033385_010 Hb_068569_010--Hb_033385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.6992 1.70769 5.09588 19.1576 0.402996 9.28323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.491437 0.776718 0.52102 1.63264 1.68577

CAGE analysis