Hb_054581_010

Information

Type -
Description -
Location Contig54581: 1265-2677
Sequence    

Annotation

kegg
ID tcc:TCM_022000
description Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2
nr
ID XP_007027110.1
description Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
swissprot
ID Q9LR47
description Type I inositol 1,4,5-trisphosphate 5-phosphatase CVP2 OS=Arabidopsis thaliana GN=CVP2 PE=1 SV=2
trembl
ID A0A061ET90
description Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 OS=Theobroma cacao GN=TCM_022000 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054581_010 0.0 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
2 Hb_000069_290 0.0476759147 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
3 Hb_000753_270 0.0934352266 - - -
4 Hb_027450_020 0.1508993573 - - PREDICTED: B3 domain-containing protein At2g31420-like [Citrus sinensis]
5 Hb_009486_110 0.1526682799 - - PREDICTED: rac-like GTP-binding protein RAC2 [Jatropha curcas]
6 Hb_000577_060 0.1955357016 - - -
7 Hb_000614_310 0.198189577 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004308_010 0.2155242308 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
9 Hb_006775_050 0.2473271476 - - PREDICTED: GDSL esterase/lipase At1g29670 isoform X2 [Nicotiana sylvestris]
10 Hb_005870_010 0.2565330794 - - -
11 Hb_020259_020 0.2970031931 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
12 Hb_019863_020 0.2981469823 - - PREDICTED: wound-induced protein 1 [Jatropha curcas]
13 Hb_001277_060 0.3032898902 - - ADP-ribosylation factor-like protein 5 [Morus notabilis]
14 Hb_010866_020 0.3053671299 - - unnamed protein product [Vitis vinifera]
15 Hb_000170_180 0.3097569038 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]
16 Hb_000181_370 0.3107346095 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003207_050 0.3212149073 - - PREDICTED: cucumisin-like [Jatropha curcas]
18 Hb_000367_110 0.3318777818 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
19 Hb_000170_170 0.3324200488 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
20 Hb_000188_080 0.3324241403 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]

Gene co-expression network

sample Hb_054581_010 Hb_054581_010 Hb_000069_290 Hb_000069_290 Hb_054581_010--Hb_000069_290 Hb_000753_270 Hb_000753_270 Hb_054581_010--Hb_000753_270 Hb_027450_020 Hb_027450_020 Hb_054581_010--Hb_027450_020 Hb_009486_110 Hb_009486_110 Hb_054581_010--Hb_009486_110 Hb_000577_060 Hb_000577_060 Hb_054581_010--Hb_000577_060 Hb_000614_310 Hb_000614_310 Hb_054581_010--Hb_000614_310 Hb_000069_290--Hb_000753_270 Hb_000069_290--Hb_000577_060 Hb_000069_290--Hb_000614_310 Hb_004308_010 Hb_004308_010 Hb_000069_290--Hb_004308_010 Hb_000069_290--Hb_027450_020 Hb_000753_270--Hb_000577_060 Hb_000753_270--Hb_004308_010 Hb_000753_270--Hb_000614_310 Hb_000753_270--Hb_027450_020 Hb_027450_020--Hb_009486_110 Hb_006775_050 Hb_006775_050 Hb_027450_020--Hb_006775_050 Hb_019863_020 Hb_019863_020 Hb_027450_020--Hb_019863_020 Hb_009486_110--Hb_006775_050 Hb_009486_110--Hb_019863_020 Hb_009486_110--Hb_000069_290 Hb_009486_110--Hb_000753_270 Hb_000577_060--Hb_004308_010 Hb_000577_060--Hb_000614_310 Hb_000188_080 Hb_000188_080 Hb_000577_060--Hb_000188_080 Hb_000170_180 Hb_000170_180 Hb_000614_310--Hb_000170_180 Hb_001277_060 Hb_001277_060 Hb_000614_310--Hb_001277_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.428738 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.171209 0 0 0 0

CAGE analysis