Hb_054615_010

Information

Type -
Description -
Location Contig54615: 2393-5294
Sequence    

Annotation

kegg
ID rcu:RCOM_0188570
description Chromosome-associated kinesin KIF4A, putative
nr
ID XP_002528909.1
description Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SSE0
description Kinesin-like protein OS=Ricinus communis GN=RCOM_0188570 PE=3 SV=1
Gene Ontology
ID GO:0005871
description kinesin-like protein kif19

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47988: 4182-4719
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054615_010 0.0 - - Chromosome-associated kinesin KIF4A, putative [Ricinus communis]
2 Hb_089736_010 0.0475581528 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 7 [Populus euphratica]
3 Hb_004003_020 0.0729980747 - - unnamed protein product [Coffea canephora]
4 Hb_074240_030 0.0758151885 transcription factor TF Family: HMG PREDICTED: high mobility group B protein 3-like [Jatropha curcas]
5 Hb_088118_010 0.0796876326 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
6 Hb_000152_650 0.0799889451 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_002121_030 0.0803134568 - - Ribonuclease P protein subunit P38-related isoform 1 [Theobroma cacao]
8 Hb_015299_040 0.0825709456 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
9 Hb_001369_590 0.0857254213 transcription factor TF Family: MYB hypothetical protein POPTR_0015s14600g [Populus trichocarpa]
10 Hb_158845_010 0.0873866523 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
11 Hb_000010_320 0.0890059636 - - PREDICTED: protein STICHEL-like 2 [Jatropha curcas]
12 Hb_005365_040 0.0969801673 - - hypothetical protein JCGZ_15100 [Jatropha curcas]
13 Hb_001123_340 0.0990053787 - - PREDICTED: uncharacterized protein LOC105123089 isoform X1 [Populus euphratica]
14 Hb_000051_150 0.1002514021 - - hypothetical protein CICLE_v10003316mg [Citrus clementina]
15 Hb_104014_010 0.1029543512 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
16 Hb_003387_010 0.1064466619 - - PREDICTED: protein kinase PINOID 2 [Gossypium raimondii]
17 Hb_003077_010 0.1104437697 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_002918_170 0.1134492899 - - PREDICTED: MACPF domain-containing protein NSL1 [Jatropha curcas]
19 Hb_000160_260 0.1136589593 - - nutrient reservoir, putative [Ricinus communis]
20 Hb_001357_160 0.1140833716 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_054615_010 Hb_054615_010 Hb_089736_010 Hb_089736_010 Hb_054615_010--Hb_089736_010 Hb_004003_020 Hb_004003_020 Hb_054615_010--Hb_004003_020 Hb_074240_030 Hb_074240_030 Hb_054615_010--Hb_074240_030 Hb_088118_010 Hb_088118_010 Hb_054615_010--Hb_088118_010 Hb_000152_650 Hb_000152_650 Hb_054615_010--Hb_000152_650 Hb_002121_030 Hb_002121_030 Hb_054615_010--Hb_002121_030 Hb_089736_010--Hb_088118_010 Hb_001123_340 Hb_001123_340 Hb_089736_010--Hb_001123_340 Hb_089736_010--Hb_074240_030 Hb_001926_010 Hb_001926_010 Hb_089736_010--Hb_001926_010 Hb_003387_010 Hb_003387_010 Hb_089736_010--Hb_003387_010 Hb_004003_020--Hb_002121_030 Hb_000051_150 Hb_000051_150 Hb_004003_020--Hb_000051_150 Hb_000010_320 Hb_000010_320 Hb_004003_020--Hb_000010_320 Hb_000445_320 Hb_000445_320 Hb_004003_020--Hb_000445_320 Hb_158845_010 Hb_158845_010 Hb_004003_020--Hb_158845_010 Hb_074240_030--Hb_000010_320 Hb_001856_190 Hb_001856_190 Hb_074240_030--Hb_001856_190 Hb_015299_040 Hb_015299_040 Hb_074240_030--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_074240_030--Hb_001357_160 Hb_003090_020 Hb_003090_020 Hb_074240_030--Hb_003090_020 Hb_000816_080 Hb_000816_080 Hb_088118_010--Hb_000816_080 Hb_088118_010--Hb_001926_010 Hb_001921_040 Hb_001921_040 Hb_088118_010--Hb_001921_040 Hb_004007_080 Hb_004007_080 Hb_088118_010--Hb_004007_080 Hb_000152_650--Hb_002121_030 Hb_000264_160 Hb_000264_160 Hb_000152_650--Hb_000264_160 Hb_001369_590 Hb_001369_590 Hb_000152_650--Hb_001369_590 Hb_104014_010 Hb_104014_010 Hb_000152_650--Hb_104014_010 Hb_005365_040 Hb_005365_040 Hb_000152_650--Hb_005365_040 Hb_002121_030--Hb_001369_590 Hb_002121_030--Hb_000051_150 Hb_000809_220 Hb_000809_220 Hb_002121_030--Hb_000809_220 Hb_002121_030--Hb_005365_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0232093 1.32589 37.9142 7.31905 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0531936 0 0 0.589403 7.42457

CAGE analysis