Hb_054745_010

Information

Type -
Description -
Location Contig54745: 6816-22253
Sequence    

Annotation

kegg
ID rcu:RCOM_0967020
description hypothetical protein
nr
ID XP_002517803.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5HZP1
description Ribonuclease H2 subunit B OS=Xenopus laevis GN=rnaseh2b PE=2 SV=1
trembl
ID B9RVN4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0967020 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ribonuclease h2 subunit b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48025: 6811-22275 , PASA_asmbl_48026: 6837-7085 , PASA_asmbl_48027: 13910-14324
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054745_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_004157_100 0.0736295225 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
3 Hb_000676_080 0.0821386543 - - PREDICTED: uncharacterized WD repeat-containing protein C17D11.16 [Jatropha curcas]
4 Hb_000107_230 0.093693341 - - unknown [Medicago truncatula]
5 Hb_006153_070 0.0943058574 - - 3-oxoacyl-[acyl-carrier-protein] synthase 3 A, chloroplastic [Jatropha curcas]
6 Hb_000594_050 0.0967110541 - - PREDICTED: pH-response regulator protein palA/RIM20 isoform X1 [Jatropha curcas]
7 Hb_002205_210 0.100243945 - - PREDICTED: aminoacyl tRNA synthase complex-interacting multifunctional protein 1 isoform X2 [Jatropha curcas]
8 Hb_001014_110 0.1068322193 - - PREDICTED: ubiquitin thioesterase otubain-like [Jatropha curcas]
9 Hb_000521_120 0.1099839783 - - PREDICTED: cyclic pyranopterin monophosphate synthase, mitochondrial isoform X1 [Jatropha curcas]
10 Hb_006588_170 0.1100685702 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
11 Hb_001191_110 0.1102228302 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
12 Hb_002375_040 0.1102713207 - - PREDICTED: 15 kDa selenoprotein [Jatropha curcas]
13 Hb_086085_020 0.11081518 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein isoform 3 [Theobroma cacao]
14 Hb_162603_010 0.1111914974 - - WD-repeat protein, putative [Ricinus communis]
15 Hb_004127_030 0.1118706889 - - putative Rab geranylgeranyl transferase type II beta subunit family protein [Populus trichocarpa]
16 Hb_005078_010 0.1119208643 - - Derlin-2, putative [Ricinus communis]
17 Hb_009049_020 0.1122132715 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
18 Hb_169631_010 0.1123638087 - - MADS-box transcription factor, putative [Ricinus communis]
19 Hb_007831_010 0.1124823653 - - PREDICTED: oligoribonuclease [Vitis vinifera]
20 Hb_001575_070 0.1133412332 - - PREDICTED: uncharacterized protein LOC105639885 [Jatropha curcas]

Gene co-expression network

sample Hb_054745_010 Hb_054745_010 Hb_004157_100 Hb_004157_100 Hb_054745_010--Hb_004157_100 Hb_000676_080 Hb_000676_080 Hb_054745_010--Hb_000676_080 Hb_000107_230 Hb_000107_230 Hb_054745_010--Hb_000107_230 Hb_006153_070 Hb_006153_070 Hb_054745_010--Hb_006153_070 Hb_000594_050 Hb_000594_050 Hb_054745_010--Hb_000594_050 Hb_002205_210 Hb_002205_210 Hb_054745_010--Hb_002205_210 Hb_004157_100--Hb_000107_230 Hb_169631_010 Hb_169631_010 Hb_004157_100--Hb_169631_010 Hb_004157_100--Hb_000676_080 Hb_000004_020 Hb_000004_020 Hb_004157_100--Hb_000004_020 Hb_000022_020 Hb_000022_020 Hb_004157_100--Hb_000022_020 Hb_005527_020 Hb_005527_020 Hb_000676_080--Hb_005527_020 Hb_001250_060 Hb_001250_060 Hb_000676_080--Hb_001250_060 Hb_002271_020 Hb_002271_020 Hb_000676_080--Hb_002271_020 Hb_000453_160 Hb_000453_160 Hb_000676_080--Hb_000453_160 Hb_000207_150 Hb_000207_150 Hb_000107_230--Hb_000207_150 Hb_007831_010 Hb_007831_010 Hb_000107_230--Hb_007831_010 Hb_006588_170 Hb_006588_170 Hb_000107_230--Hb_006588_170 Hb_000107_230--Hb_000594_050 Hb_003929_170 Hb_003929_170 Hb_000107_230--Hb_003929_170 Hb_009898_050 Hb_009898_050 Hb_006153_070--Hb_009898_050 Hb_000110_310 Hb_000110_310 Hb_006153_070--Hb_000110_310 Hb_006153_070--Hb_007831_010 Hb_168978_030 Hb_168978_030 Hb_006153_070--Hb_168978_030 Hb_000640_170 Hb_000640_170 Hb_006153_070--Hb_000640_170 Hb_000579_120 Hb_000579_120 Hb_006153_070--Hb_000579_120 Hb_000181_130 Hb_000181_130 Hb_000594_050--Hb_000181_130 Hb_003750_050 Hb_003750_050 Hb_000594_050--Hb_003750_050 Hb_000594_050--Hb_006588_170 Hb_002811_180 Hb_002811_180 Hb_000594_050--Hb_002811_180 Hb_002641_060 Hb_002641_060 Hb_000594_050--Hb_002641_060 Hb_001040_100 Hb_001040_100 Hb_002205_210--Hb_001040_100 Hb_002205_210--Hb_168978_030 Hb_063716_100 Hb_063716_100 Hb_002205_210--Hb_063716_100 Hb_002205_210--Hb_000640_170 Hb_001599_040 Hb_001599_040 Hb_002205_210--Hb_001599_040 Hb_000302_310 Hb_000302_310 Hb_002205_210--Hb_000302_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.5585 5.84922 18.766 25.5096 12.208 34.1781
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5589 17.1138 10.9691 16.4136 15.2215

CAGE analysis