Hb_054865_010

Information

Type -
Description -
Location Contig54865: 8663-13448
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17670g
description POPTRDRAFT_755443; hypothetical protein
nr
ID XP_012083131.1
description PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
swissprot
ID Q9FZ45
description Uncharacterized membrane protein At1g16860 OS=Arabidopsis thaliana GN=At1g16860 PE=1 SV=1
trembl
ID A0A067JX28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14208 PE=4 SV=1
Gene Ontology
ID GO:0008233
description uncharacterized membrane protein at1g16860-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48069: 8916-12989 , PASA_asmbl_48071: 13998-15227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_010 0.0 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
2 Hb_000000_180 0.1432196527 - - PREDICTED: 30S ribosomal protein S9, chloroplastic-like [Populus euphratica]
3 Hb_003398_040 0.1505011173 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
4 Hb_001587_040 0.1612297061 - - PREDICTED: soluble inorganic pyrophosphatase 6, chloroplastic [Jatropha curcas]
5 Hb_002078_120 0.1619298676 - - PREDICTED: F-box/kelch-repeat protein At1g67480 [Jatropha curcas]
6 Hb_000011_560 0.1682071647 - - PREDICTED: phosphoinositide phosphatase SAC2 isoform X1 [Jatropha curcas]
7 Hb_002045_090 0.1774901253 - - PREDICTED: tryptophan synthase alpha chain-like [Jatropha curcas]
8 Hb_000483_270 0.178427029 - - PREDICTED: uncharacterized protein LOC105632352 [Jatropha curcas]
9 Hb_004102_080 0.178781222 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
10 Hb_006153_150 0.1813262983 - - PREDICTED: uncharacterized protein LOC105645999 [Jatropha curcas]
11 Hb_000310_060 0.1830206961 - - hypothetical protein JCGZ_20793 [Jatropha curcas]
12 Hb_000941_060 0.183401108 transcription factor TF Family: HB hypothetical protein POPTR_0016s05890g [Populus trichocarpa]
13 Hb_004195_140 0.1844721981 - - Sec14 cytosolic factor, putative [Ricinus communis]
14 Hb_004052_100 0.1850820594 - - PREDICTED: protein SPIRAL1-like 3 [Jatropha curcas]
15 Hb_000270_280 0.1855871178 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
16 Hb_002942_120 0.1872881645 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
17 Hb_012545_040 0.1888207918 - - PREDICTED: uroporphyrinogen-III synthase, chloroplastic isoform X1 [Jatropha curcas]
18 Hb_005694_050 0.1895676146 - - NC domain-containing family protein [Populus trichocarpa]
19 Hb_000189_130 0.1915965168 - - PREDICTED: sec-independent protein translocase protein TATA, chloroplastic [Jatropha curcas]
20 Hb_005527_060 0.191677088 - - malic enzyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_054865_010 Hb_054865_010 Hb_000000_180 Hb_000000_180 Hb_054865_010--Hb_000000_180 Hb_003398_040 Hb_003398_040 Hb_054865_010--Hb_003398_040 Hb_001587_040 Hb_001587_040 Hb_054865_010--Hb_001587_040 Hb_002078_120 Hb_002078_120 Hb_054865_010--Hb_002078_120 Hb_000011_560 Hb_000011_560 Hb_054865_010--Hb_000011_560 Hb_002045_090 Hb_002045_090 Hb_054865_010--Hb_002045_090 Hb_012545_040 Hb_012545_040 Hb_000000_180--Hb_012545_040 Hb_001519_170 Hb_001519_170 Hb_000000_180--Hb_001519_170 Hb_000146_030 Hb_000146_030 Hb_000000_180--Hb_000146_030 Hb_011114_020 Hb_011114_020 Hb_000000_180--Hb_011114_020 Hb_001711_060 Hb_001711_060 Hb_000000_180--Hb_001711_060 Hb_004459_060 Hb_004459_060 Hb_000000_180--Hb_004459_060 Hb_000310_060 Hb_000310_060 Hb_003398_040--Hb_000310_060 Hb_000009_420 Hb_000009_420 Hb_003398_040--Hb_000009_420 Hb_003398_040--Hb_001587_040 Hb_005527_060 Hb_005527_060 Hb_003398_040--Hb_005527_060 Hb_010868_040 Hb_010868_040 Hb_003398_040--Hb_010868_040 Hb_000753_110 Hb_000753_110 Hb_003398_040--Hb_000753_110 Hb_001587_040--Hb_000310_060 Hb_001587_040--Hb_005527_060 Hb_000996_080 Hb_000996_080 Hb_001587_040--Hb_000996_080 Hb_000307_070 Hb_000307_070 Hb_001587_040--Hb_000307_070 Hb_001390_100 Hb_001390_100 Hb_001587_040--Hb_001390_100 Hb_002078_120--Hb_002045_090 Hb_003397_030 Hb_003397_030 Hb_002078_120--Hb_003397_030 Hb_002078_120--Hb_000000_180 Hb_001386_090 Hb_001386_090 Hb_002078_120--Hb_001386_090 Hb_029510_130 Hb_029510_130 Hb_002078_120--Hb_029510_130 Hb_000483_270 Hb_000483_270 Hb_002078_120--Hb_000483_270 Hb_004545_120 Hb_004545_120 Hb_000011_560--Hb_004545_120 Hb_000011_560--Hb_000310_060 Hb_000011_560--Hb_001587_040 Hb_000327_200 Hb_000327_200 Hb_000011_560--Hb_000327_200 Hb_000011_560--Hb_005527_060 Hb_003664_030 Hb_003664_030 Hb_000011_560--Hb_003664_030 Hb_004195_140 Hb_004195_140 Hb_002045_090--Hb_004195_140 Hb_003640_050 Hb_003640_050 Hb_002045_090--Hb_003640_050 Hb_000958_120 Hb_000958_120 Hb_002045_090--Hb_000958_120 Hb_002045_090--Hb_003397_030 Hb_001141_050 Hb_001141_050 Hb_002045_090--Hb_001141_050 Hb_000224_080 Hb_000224_080 Hb_002045_090--Hb_000224_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0731502 0.286377 3.1871 0.825345 0 0.059027
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.268007 0.702687 0.130156 0.49338 1.30268

CAGE analysis