Hb_054865_020

Information

Type transcription factor
Description TF Family: HB
Location Contig54865: 13958-15275
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09860g
description POPTRDRAFT_572441; homeobox leucine zipper family protein
nr
ID XP_002320889.1
description homeobox leucine zipper family protein [Populus trichocarpa]
swissprot
ID P46897
description Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=2 SV=2
trembl
ID B9I924
description Homeobox leucine zipper family protein OS=Populus trichocarpa GN=POPTR_0014s09860g PE=4 SV=1
Gene Ontology
ID GO:0003700
description homeobox-leucine zipper protein athb-12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48071: 13998-15227
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_020 0.0 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
2 Hb_005873_020 0.0733635412 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
3 Hb_004116_160 0.0843971085 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
4 Hb_000631_090 0.1051097929 - - PREDICTED: uncharacterized protein LOC105640619 [Jatropha curcas]
5 Hb_052128_010 0.1051432313 - - PREDICTED: DNA gyrase subunit B, chloroplastic/mitochondrial-like [Nicotiana sylvestris]
6 Hb_004718_060 0.1076718 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
7 Hb_000098_240 0.1082366695 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
8 Hb_000453_230 0.1126672664 - - PREDICTED: NO-associated protein 1, chloroplastic/mitochondrial [Jatropha curcas]
9 Hb_001396_020 0.1139438533 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
10 Hb_000470_110 0.1146753881 - - PREDICTED: probable LIM domain-containing serine/threonine-protein kinase DDB_G0287001 [Jatropha curcas]
11 Hb_007777_010 0.117059237 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Tarenaya hassleriana]
12 Hb_000878_160 0.1174368163 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
13 Hb_002307_080 0.117927864 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003925_060 0.1182634088 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
15 Hb_001624_040 0.1207334849 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
16 Hb_009178_010 0.1208918443 - - PREDICTED: uncharacterized protein LOC105637474 [Jatropha curcas]
17 Hb_027380_210 0.122868623 - - PREDICTED: uncharacterized protein LOC105634030 [Jatropha curcas]
18 Hb_075203_010 0.1239796735 - - PREDICTED: calcium-dependent protein kinase SK5 isoform X1 [Jatropha curcas]
19 Hb_002026_090 0.1240072191 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
20 Hb_000045_160 0.1266553113 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]

Gene co-expression network

sample Hb_054865_020 Hb_054865_020 Hb_005873_020 Hb_005873_020 Hb_054865_020--Hb_005873_020 Hb_004116_160 Hb_004116_160 Hb_054865_020--Hb_004116_160 Hb_000631_090 Hb_000631_090 Hb_054865_020--Hb_000631_090 Hb_052128_010 Hb_052128_010 Hb_054865_020--Hb_052128_010 Hb_004718_060 Hb_004718_060 Hb_054865_020--Hb_004718_060 Hb_000098_240 Hb_000098_240 Hb_054865_020--Hb_000098_240 Hb_005873_020--Hb_004718_060 Hb_009178_010 Hb_009178_010 Hb_005873_020--Hb_009178_010 Hb_008387_010 Hb_008387_010 Hb_005873_020--Hb_008387_010 Hb_003925_060 Hb_003925_060 Hb_005873_020--Hb_003925_060 Hb_000878_160 Hb_000878_160 Hb_005873_020--Hb_000878_160 Hb_001396_020 Hb_001396_020 Hb_004116_160--Hb_001396_020 Hb_004116_160--Hb_000098_240 Hb_001279_020 Hb_001279_020 Hb_004116_160--Hb_001279_020 Hb_000529_130 Hb_000529_130 Hb_004116_160--Hb_000529_130 Hb_001624_040 Hb_001624_040 Hb_004116_160--Hb_001624_040 Hb_000045_160 Hb_000045_160 Hb_000631_090--Hb_000045_160 Hb_000470_110 Hb_000470_110 Hb_000631_090--Hb_000470_110 Hb_011930_100 Hb_011930_100 Hb_000631_090--Hb_011930_100 Hb_002307_080 Hb_002307_080 Hb_000631_090--Hb_002307_080 Hb_000803_090 Hb_000803_090 Hb_000631_090--Hb_000803_090 Hb_001396_240 Hb_001396_240 Hb_052128_010--Hb_001396_240 Hb_052128_010--Hb_001396_020 Hb_004466_050 Hb_004466_050 Hb_052128_010--Hb_004466_050 Hb_052128_010--Hb_002307_080 Hb_000453_030 Hb_000453_030 Hb_052128_010--Hb_000453_030 Hb_004718_060--Hb_009178_010 Hb_000956_040 Hb_000956_040 Hb_004718_060--Hb_000956_040 Hb_000172_360 Hb_000172_360 Hb_004718_060--Hb_000172_360 Hb_005305_100 Hb_005305_100 Hb_004718_060--Hb_005305_100 Hb_000260_760 Hb_000260_760 Hb_004718_060--Hb_000260_760 Hb_033642_040 Hb_033642_040 Hb_000098_240--Hb_033642_040 Hb_016448_010 Hb_016448_010 Hb_000098_240--Hb_016448_010 Hb_000098_240--Hb_000878_160 Hb_001158_160 Hb_001158_160 Hb_000098_240--Hb_001158_160 Hb_026234_010 Hb_026234_010 Hb_000098_240--Hb_026234_010 Hb_000820_150 Hb_000820_150 Hb_000098_240--Hb_000820_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.7055 18.0647 29.6666 14.1913 7.58863 14.4733
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.07963 2.61627 2.40219 9.2142 17.8377

CAGE analysis