Hb_054865_050

Information

Type -
Description -
Location Contig54865: 44746-52724
Sequence    

Annotation

kegg
ID rcu:RCOM_0130230
description calcium-dependent protein kinase, putative (EC:2.7.11.17)
nr
ID XP_002529963.1
description calcium-dependent protein kinase, putative [Ricinus communis]
swissprot
ID Q9ZUZ2
description CDPK-related kinase 3 OS=Arabidopsis thaliana GN=CRK3 PE=1 SV=1
trembl
ID B9SVE4
description Calcium-dependent protein kinase, putative OS=Ricinus communis GN=RCOM_0130230 PE=4 SV=1
Gene Ontology
ID GO:0004672
description cdpk-related kinase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48079: 44770-52681
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_050 0.0 - - calcium-dependent protein kinase, putative [Ricinus communis]
2 Hb_009449_100 0.0732755001 - - PREDICTED: equilibrative nucleotide transporter 1 [Jatropha curcas]
3 Hb_005064_070 0.0940789923 - - PREDICTED: uncharacterized protein LOC105648318 [Jatropha curcas]
4 Hb_002249_170 0.0985954631 - - copine, putative [Ricinus communis]
5 Hb_000375_060 0.1012992138 transcription factor TF Family: C2H2 PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like [Jatropha curcas]
6 Hb_001514_240 0.1064166404 - - PREDICTED: aspartic proteinase CDR1 [Jatropha curcas]
7 Hb_000098_180 0.1069258075 - - PREDICTED: uncharacterized protein LOC105633342 isoform X2 [Jatropha curcas]
8 Hb_001729_020 0.1086877089 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
9 Hb_000979_140 0.1101848123 - - kinase family protein [Populus trichocarpa]
10 Hb_002259_220 0.1119845903 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 66 [Jatropha curcas]
11 Hb_132840_020 0.1133568539 - - PREDICTED: protein LHY [Jatropha curcas]
12 Hb_048476_040 0.1140666621 - - PREDICTED: uncharacterized protein LOC104611656 [Nelumbo nucifera]
13 Hb_012762_040 0.1171716773 - - big map kinase/bmk, putative [Ricinus communis]
14 Hb_001318_150 0.1225231847 - - PREDICTED: shaggy-related protein kinase alpha-like [Jatropha curcas]
15 Hb_004679_040 0.1225268253 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
16 Hb_086639_050 0.1229761697 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
17 Hb_001117_080 0.1231331785 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
18 Hb_000589_170 0.1250806253 - - PREDICTED: telomere repeat-binding protein 4 isoform X3 [Jatropha curcas]
19 Hb_000086_640 0.1255662833 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
20 Hb_000329_790 0.1260917144 - - PREDICTED: uncharacterized protein LOC105643367 [Jatropha curcas]

Gene co-expression network

sample Hb_054865_050 Hb_054865_050 Hb_009449_100 Hb_009449_100 Hb_054865_050--Hb_009449_100 Hb_005064_070 Hb_005064_070 Hb_054865_050--Hb_005064_070 Hb_002249_170 Hb_002249_170 Hb_054865_050--Hb_002249_170 Hb_000375_060 Hb_000375_060 Hb_054865_050--Hb_000375_060 Hb_001514_240 Hb_001514_240 Hb_054865_050--Hb_001514_240 Hb_000098_180 Hb_000098_180 Hb_054865_050--Hb_000098_180 Hb_009449_100--Hb_001514_240 Hb_009449_100--Hb_005064_070 Hb_002259_220 Hb_002259_220 Hb_009449_100--Hb_002259_220 Hb_026698_020 Hb_026698_020 Hb_009449_100--Hb_026698_020 Hb_000329_790 Hb_000329_790 Hb_009449_100--Hb_000329_790 Hb_048476_040 Hb_048476_040 Hb_005064_070--Hb_048476_040 Hb_003670_030 Hb_003670_030 Hb_005064_070--Hb_003670_030 Hb_005064_070--Hb_000329_790 Hb_005064_070--Hb_000375_060 Hb_001318_150 Hb_001318_150 Hb_002249_170--Hb_001318_150 Hb_003106_200 Hb_003106_200 Hb_002249_170--Hb_003106_200 Hb_011671_110 Hb_011671_110 Hb_002249_170--Hb_011671_110 Hb_086639_050 Hb_086639_050 Hb_002249_170--Hb_086639_050 Hb_001247_210 Hb_001247_210 Hb_002249_170--Hb_001247_210 Hb_000979_140 Hb_000979_140 Hb_000375_060--Hb_000979_140 Hb_001729_020 Hb_001729_020 Hb_000375_060--Hb_001729_020 Hb_000375_060--Hb_000098_180 Hb_000853_330 Hb_000853_330 Hb_000375_060--Hb_000853_330 Hb_001514_240--Hb_026698_020 Hb_001514_240--Hb_002259_220 Hb_001499_070 Hb_001499_070 Hb_001514_240--Hb_001499_070 Hb_013968_010 Hb_013968_010 Hb_001514_240--Hb_013968_010 Hb_187005_010 Hb_187005_010 Hb_001514_240--Hb_187005_010 Hb_004218_130 Hb_004218_130 Hb_000098_180--Hb_004218_130 Hb_000589_170 Hb_000589_170 Hb_000098_180--Hb_000589_170 Hb_001117_080 Hb_001117_080 Hb_000098_180--Hb_001117_080 Hb_009296_020 Hb_009296_020 Hb_000098_180--Hb_009296_020 Hb_000098_180--Hb_002259_220 Hb_011188_010 Hb_011188_010 Hb_000098_180--Hb_011188_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.07979 8.7324 12.4546 7.32163 0.653664 0.577525
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.56112 1.65911 1.33438 4.48961 6.5921

CAGE analysis