Hb_054865_060

Information

Type -
Description -
Location Contig54865: 62635-66521
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09940g
description POPTRDRAFT_1098697; hypothetical protein
nr
ID XP_011038985.1
description PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
swissprot
ID Q8GYY5
description Rho GTPase-activating protein 3 OS=Arabidopsis thaliana GN=ROPGAP3 PE=2 SV=1
trembl
ID B9I928
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s09940g PE=4 SV=1
Gene Ontology
ID GO:0007165
description rho gtpase-activating protein 3-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48081: 62680-66236
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_060 0.0 - - PREDICTED: rho GTPase-activating protein 3-like isoform X1 [Populus euphratica]
2 Hb_005529_030 0.1185234855 - - PREDICTED: cytochrome P450 94A1-like [Populus euphratica]
3 Hb_002027_090 0.1581794059 - - -
4 Hb_005271_160 0.1731032529 - - PREDICTED: uncharacterized protein LOC105645844 [Jatropha curcas]
5 Hb_048141_030 0.1818061222 - - PREDICTED: pentatricopeptide repeat-containing protein At3g59040-like [Prunus mume]
6 Hb_137276_010 0.1840635016 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
7 Hb_004738_110 0.1851640187 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
8 Hb_000203_230 0.1887498228 - - PREDICTED: probable inactive dual specificity protein phosphatase-like At4g18593 [Jatropha curcas]
9 Hb_000084_280 0.1918453112 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
10 Hb_002053_110 0.1935257715 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_001307_040 0.1959902698 - - PREDICTED: AT-rich interactive domain-containing protein 4B [Jatropha curcas]
12 Hb_003992_030 0.1990956115 - - Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic [Gossypium arboreum]
13 Hb_000358_140 0.1995554032 - - conserved hypothetical protein [Ricinus communis]
14 Hb_143629_060 0.200047282 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 3, chloroplastic [Jatropha curcas]
15 Hb_007313_100 0.2005979704 desease resistance Gene Name: NB-ARC Disease resistance protein RPS2, putative [Ricinus communis]
16 Hb_000948_170 0.201471972 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
17 Hb_002769_020 0.2016242786 - - DNA-damage-inducible protein f, putative [Ricinus communis]
18 Hb_000816_100 0.202678238 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
19 Hb_000627_250 0.2035175653 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
20 Hb_000920_030 0.2041738295 - - short chain alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_054865_060 Hb_054865_060 Hb_005529_030 Hb_005529_030 Hb_054865_060--Hb_005529_030 Hb_002027_090 Hb_002027_090 Hb_054865_060--Hb_002027_090 Hb_005271_160 Hb_005271_160 Hb_054865_060--Hb_005271_160 Hb_048141_030 Hb_048141_030 Hb_054865_060--Hb_048141_030 Hb_137276_010 Hb_137276_010 Hb_054865_060--Hb_137276_010 Hb_004738_110 Hb_004738_110 Hb_054865_060--Hb_004738_110 Hb_005534_030 Hb_005534_030 Hb_005529_030--Hb_005534_030 Hb_001307_040 Hb_001307_040 Hb_005529_030--Hb_001307_040 Hb_003900_030 Hb_003900_030 Hb_005529_030--Hb_003900_030 Hb_005529_030--Hb_002027_090 Hb_005529_030--Hb_005271_160 Hb_000358_140 Hb_000358_140 Hb_002027_090--Hb_000358_140 Hb_010812_050 Hb_010812_050 Hb_002027_090--Hb_010812_050 Hb_005496_050 Hb_005496_050 Hb_002027_090--Hb_005496_050 Hb_041327_020 Hb_041327_020 Hb_002027_090--Hb_041327_020 Hb_006816_180 Hb_006816_180 Hb_002027_090--Hb_006816_180 Hb_000627_250 Hb_000627_250 Hb_002027_090--Hb_000627_250 Hb_008206_060 Hb_008206_060 Hb_005271_160--Hb_008206_060 Hb_065525_130 Hb_065525_130 Hb_005271_160--Hb_065525_130 Hb_008092_050 Hb_008092_050 Hb_005271_160--Hb_008092_050 Hb_005271_160--Hb_003900_030 Hb_012098_150 Hb_012098_150 Hb_005271_160--Hb_012098_150 Hb_001959_240 Hb_001959_240 Hb_005271_160--Hb_001959_240 Hb_048141_030--Hb_065525_130 Hb_000175_590 Hb_000175_590 Hb_048141_030--Hb_000175_590 Hb_000015_100 Hb_000015_100 Hb_048141_030--Hb_000015_100 Hb_006570_010 Hb_006570_010 Hb_048141_030--Hb_006570_010 Hb_000085_140 Hb_000085_140 Hb_048141_030--Hb_000085_140 Hb_000948_170 Hb_000948_170 Hb_048141_030--Hb_000948_170 Hb_007313_100 Hb_007313_100 Hb_137276_010--Hb_007313_100 Hb_011931_060 Hb_011931_060 Hb_137276_010--Hb_011931_060 Hb_004545_170 Hb_004545_170 Hb_137276_010--Hb_004545_170 Hb_003058_020 Hb_003058_020 Hb_137276_010--Hb_003058_020 Hb_022250_100 Hb_022250_100 Hb_137276_010--Hb_022250_100 Hb_002092_110 Hb_002092_110 Hb_137276_010--Hb_002092_110 Hb_143629_060 Hb_143629_060 Hb_004738_110--Hb_143629_060 Hb_005288_110 Hb_005288_110 Hb_004738_110--Hb_005288_110 Hb_006052_030 Hb_006052_030 Hb_004738_110--Hb_006052_030 Hb_004738_110--Hb_048141_030 Hb_004738_110--Hb_003058_020 Hb_002053_110 Hb_002053_110 Hb_004738_110--Hb_002053_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.9853 13.7703 34.666 26.7226 46.2783 38.7255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3077 12.1063 7.84326 3.25936 90.2242

CAGE analysis