Hb_054865_070

Information

Type transcription factor
Description TF Family: bHLH
Location Contig54865: 72260-73726
Sequence    

Annotation

kegg
ID pop:POPTR_0002s17750g
description POPTRDRAFT_552325; basic helix-loop-helix family protein
nr
ID XP_002301432.1
description basic helix-loop-helix family protein [Populus trichocarpa]
swissprot
ID O49687
description Transcription factor MYC4 OS=Arabidopsis thaliana GN=MYC4 PE=1 SV=1
trembl
ID B9GR68
description Basic helix-loop-helix family protein OS=Populus trichocarpa GN=POPTR_0002s17750g PE=4 SV=1
Gene Ontology
ID GO:0046983
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_070 0.0 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
2 Hb_002259_190 0.1450775058 - - Omega-3 fatty acid desaturase, endoplasmic reticulum, putative [Ricinus communis]
3 Hb_004324_160 0.2516178597 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
4 Hb_004129_160 0.2651659393 - - small heat-shock protein, putative [Ricinus communis]
5 Hb_000703_040 0.2658960031 - - hypothetical protein RCOM_1177160 [Ricinus communis]
6 Hb_010519_030 0.2933527332 - - -
7 Hb_001214_080 0.2951070643 - - PREDICTED: transcription factor HBP-1b(c38)-like [Jatropha curcas]
8 Hb_156850_060 0.2988044657 - - PREDICTED: uncharacterized protein LOC105635248 [Jatropha curcas]
9 Hb_014720_010 0.3070874783 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000321_130 0.3079509462 - - Alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_009680_040 0.3079747531 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000752_030 0.3091768792 transcription factor TF Family: bHLH hypothetical protein RCOM_0978110 [Ricinus communis]
13 Hb_010534_030 0.3092229019 - - calcineurin-like phosphoesterase [Manihot esculenta]
14 Hb_001950_130 0.3093646933 - - -
15 Hb_004970_080 0.3096450388 - - PREDICTED: protein RALF-like 34 [Jatropha curcas]
16 Hb_000264_330 0.3108405018 - - PREDICTED: uncharacterized protein LOC105766768 [Gossypium raimondii]
17 Hb_000139_210 0.3112370422 - - -
18 Hb_005946_180 0.3126672978 - - PREDICTED: uncharacterized protein LOC100818788 [Glycine max]
19 Hb_001141_110 0.3185044104 - - hypothetical protein JCGZ_02206 [Jatropha curcas]
20 Hb_000033_040 0.3221539595 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_054865_070 Hb_054865_070 Hb_002259_190 Hb_002259_190 Hb_054865_070--Hb_002259_190 Hb_004324_160 Hb_004324_160 Hb_054865_070--Hb_004324_160 Hb_004129_160 Hb_004129_160 Hb_054865_070--Hb_004129_160 Hb_000703_040 Hb_000703_040 Hb_054865_070--Hb_000703_040 Hb_010519_030 Hb_010519_030 Hb_054865_070--Hb_010519_030 Hb_001214_080 Hb_001214_080 Hb_054865_070--Hb_001214_080 Hb_002259_190--Hb_000703_040 Hb_002259_190--Hb_004324_160 Hb_000321_130 Hb_000321_130 Hb_002259_190--Hb_000321_130 Hb_002259_190--Hb_010519_030 Hb_002259_190--Hb_001214_080 Hb_004324_160--Hb_000321_130 Hb_007547_020 Hb_007547_020 Hb_004324_160--Hb_007547_020 Hb_004324_160--Hb_000703_040 Hb_012338_020 Hb_012338_020 Hb_004324_160--Hb_012338_020 Hb_001141_110 Hb_001141_110 Hb_004129_160--Hb_001141_110 Hb_004679_060 Hb_004679_060 Hb_004129_160--Hb_004679_060 Hb_005656_190 Hb_005656_190 Hb_004129_160--Hb_005656_190 Hb_147752_010 Hb_147752_010 Hb_004129_160--Hb_147752_010 Hb_170426_010 Hb_170426_010 Hb_004129_160--Hb_170426_010 Hb_000045_210 Hb_000045_210 Hb_004129_160--Hb_000045_210 Hb_000703_040--Hb_000321_130 Hb_000917_170 Hb_000917_170 Hb_000703_040--Hb_000917_170 Hb_014720_010 Hb_014720_010 Hb_000703_040--Hb_014720_010 Hb_003777_360 Hb_003777_360 Hb_010519_030--Hb_003777_360 Hb_000223_180 Hb_000223_180 Hb_010519_030--Hb_000223_180 Hb_001638_070 Hb_001638_070 Hb_010519_030--Hb_001638_070 Hb_010519_030--Hb_004324_160 Hb_001951_250 Hb_001951_250 Hb_010519_030--Hb_001951_250 Hb_000130_230 Hb_000130_230 Hb_010519_030--Hb_000130_230 Hb_001247_330 Hb_001247_330 Hb_001214_080--Hb_001247_330 Hb_002150_050 Hb_002150_050 Hb_001214_080--Hb_002150_050 Hb_002784_150 Hb_002784_150 Hb_001214_080--Hb_002784_150 Hb_000033_040 Hb_000033_040 Hb_001214_080--Hb_000033_040 Hb_001767_050 Hb_001767_050 Hb_001214_080--Hb_001767_050 Hb_000962_080 Hb_000962_080 Hb_001214_080--Hb_000962_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.442389 0.505968 38.4556 1.14029 0.0281792 0.147993
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.94773 113.128 21.7188 4.2473 1.26442

CAGE analysis