Hb_054865_090

Information

Type -
Description -
Location Contig54865: 84773-88393
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09970g
description POPTRDRAFT_824056; GRF1-INTERACTING FACTOR 2 family protein
nr
ID XP_002320892.1
description GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
swissprot
ID Q93VH6
description GRF1-interacting factor 3 OS=Arabidopsis thaliana GN=GIF3 PE=1 SV=1
trembl
ID B9I931
description GRF1-INTERACTING FACTOR 2 family protein OS=Populus trichocarpa GN=POPTR_0014s09970g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48084: 84869-88441 , PASA_asmbl_48086: 87792-88054 , PASA_asmbl_48087: 88547-88668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_090 0.0 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
2 Hb_000275_170 0.0817958035 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
3 Hb_001610_110 0.0915014991 - - PREDICTED: vacuolar protein sorting-associated protein 32 homolog 2 [Jatropha curcas]
4 Hb_005332_070 0.0931119963 - - PREDICTED: uncharacterized protein LOC105632487 [Jatropha curcas]
5 Hb_000663_040 0.0932287028 - - PREDICTED: uncharacterized protein LOC105650729 isoform X1 [Jatropha curcas]
6 Hb_000244_300 0.0941406645 - - PREDICTED: probable 39S ribosomal protein L17, mitochondrial [Jatropha curcas]
7 Hb_005694_110 0.0949277863 - - hypothetical protein PRUPE_ppa008137mg [Prunus persica]
8 Hb_000140_080 0.0977818502 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
9 Hb_001623_140 0.0977852646 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 1 [Jatropha curcas]
10 Hb_000421_070 0.0986197079 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_000034_100 0.1008714468 - - dnajc14 protein, putative [Ricinus communis]
12 Hb_002025_110 0.1011328813 transcription factor TF Family: SWI/SNF-BAF60b PREDICTED: SWI/SNF complex component SNF12 homolog isoform X1 [Jatropha curcas]
13 Hb_022250_030 0.1020054134 - - conserved hypothetical protein [Ricinus communis]
14 Hb_033095_020 0.1022060524 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001073_070 0.1037766835 - - PREDICTED: uncharacterized protein LOC105644546 isoform X1 [Jatropha curcas]
16 Hb_000621_080 0.1040749589 - - conserved hypothetical protein [Ricinus communis]
17 Hb_086639_070 0.1045441433 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
18 Hb_001014_050 0.1052302527 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105647306 [Jatropha curcas]
19 Hb_012799_110 0.1054444586 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
20 Hb_000613_090 0.1067102336 - - PREDICTED: uncharacterized protein LOC105641542 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_054865_090 Hb_054865_090 Hb_000275_170 Hb_000275_170 Hb_054865_090--Hb_000275_170 Hb_001610_110 Hb_001610_110 Hb_054865_090--Hb_001610_110 Hb_005332_070 Hb_005332_070 Hb_054865_090--Hb_005332_070 Hb_000663_040 Hb_000663_040 Hb_054865_090--Hb_000663_040 Hb_000244_300 Hb_000244_300 Hb_054865_090--Hb_000244_300 Hb_005694_110 Hb_005694_110 Hb_054865_090--Hb_005694_110 Hb_004032_430 Hb_004032_430 Hb_000275_170--Hb_004032_430 Hb_000220_040 Hb_000220_040 Hb_000275_170--Hb_000220_040 Hb_004310_150 Hb_004310_150 Hb_000275_170--Hb_004310_150 Hb_112798_020 Hb_112798_020 Hb_000275_170--Hb_112798_020 Hb_000275_170--Hb_005694_110 Hb_000959_210 Hb_000959_210 Hb_000275_170--Hb_000959_210 Hb_001623_140 Hb_001623_140 Hb_001610_110--Hb_001623_140 Hb_052764_050 Hb_052764_050 Hb_001610_110--Hb_052764_050 Hb_004324_340 Hb_004324_340 Hb_001610_110--Hb_004324_340 Hb_001288_080 Hb_001288_080 Hb_001610_110--Hb_001288_080 Hb_000621_080 Hb_000621_080 Hb_001610_110--Hb_000621_080 Hb_086639_070 Hb_086639_070 Hb_001610_110--Hb_086639_070 Hb_011571_020 Hb_011571_020 Hb_005332_070--Hb_011571_020 Hb_000473_040 Hb_000473_040 Hb_005332_070--Hb_000473_040 Hb_000089_220 Hb_000089_220 Hb_005332_070--Hb_000089_220 Hb_011360_140 Hb_011360_140 Hb_005332_070--Hb_011360_140 Hb_012762_050 Hb_012762_050 Hb_005332_070--Hb_012762_050 Hb_003001_140 Hb_003001_140 Hb_005332_070--Hb_003001_140 Hb_000663_040--Hb_000244_300 Hb_000421_070 Hb_000421_070 Hb_000663_040--Hb_000421_070 Hb_001117_100 Hb_001117_100 Hb_000663_040--Hb_001117_100 Hb_000663_040--Hb_005332_070 Hb_000465_470 Hb_000465_470 Hb_000663_040--Hb_000465_470 Hb_011609_100 Hb_011609_100 Hb_000663_040--Hb_011609_100 Hb_000394_190 Hb_000394_190 Hb_000244_300--Hb_000394_190 Hb_000359_330 Hb_000359_330 Hb_000244_300--Hb_000359_330 Hb_011848_010 Hb_011848_010 Hb_000244_300--Hb_011848_010 Hb_000140_080 Hb_000140_080 Hb_000244_300--Hb_000140_080 Hb_003849_060 Hb_003849_060 Hb_000244_300--Hb_003849_060 Hb_000034_100 Hb_000034_100 Hb_005694_110--Hb_000034_100 Hb_005276_210 Hb_005276_210 Hb_005694_110--Hb_005276_210 Hb_003010_030 Hb_003010_030 Hb_005694_110--Hb_003010_030 Hb_000096_070 Hb_000096_070 Hb_005694_110--Hb_000096_070 Hb_000300_060 Hb_000300_060 Hb_005694_110--Hb_000300_060 Hb_000462_140 Hb_000462_140 Hb_005694_110--Hb_000462_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.0038 88.2383 47.0327 18.2365 96.0463 73.9203
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.7501 100.878 50.6739 27.4197 22.9994

CAGE analysis