Hb_054865_100

Information

Type -
Description -
Location Contig54865: 96942-101548
Sequence    

Annotation

kegg
ID pop:POPTR_0014s09980g
description POPTRDRAFT_572449; hypothetical protein
nr
ID XP_012083120.1
description PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
swissprot
ID Q5M757
description Probable protein S-acyltransferase 12 OS=Arabidopsis thaliana GN=PAT12 PE=2 SV=1
trembl
ID A0A067K821
description S-acyltransferase OS=Jatropha curcas GN=JCGZ_14201 PE=3 SV=1
Gene Ontology
ID GO:0008270
description probable protein s-acyltransferase 12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48088: 97177-98598 , PASA_asmbl_48089: 99518-101559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_100 0.0 - - PREDICTED: probable protein S-acyltransferase 12 isoform X1 [Jatropha curcas]
2 Hb_066182_010 0.0548895107 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
3 Hb_005276_210 0.0550793861 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
4 Hb_006620_020 0.0579995082 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
5 Hb_000327_120 0.0591289067 - - FGFR1 oncogene partner, putative [Ricinus communis]
6 Hb_000174_110 0.0652092945 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
7 Hb_000645_050 0.0652806166 - - peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Populus trichocarpa]
8 Hb_005618_160 0.0659835357 - - PREDICTED: putative proline--tRNA ligase C19C7.06 [Jatropha curcas]
9 Hb_000034_100 0.0694464399 - - dnajc14 protein, putative [Ricinus communis]
10 Hb_001595_030 0.0702363875 - - PREDICTED: nuclear inhibitor of protein phosphatase 1 isoform X1 [Jatropha curcas]
11 Hb_000038_170 0.0713343029 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
12 Hb_000879_200 0.0720257475 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
13 Hb_031527_100 0.0730139006 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000853_230 0.0741065472 - - syntaxin, putative [Ricinus communis]
15 Hb_005245_130 0.0741261814 - - PREDICTED: uncharacterized protein LOC105643730 [Jatropha curcas]
16 Hb_000538_100 0.0743024838 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003030_070 0.074981662 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
18 Hb_005505_050 0.075254801 - - PREDICTED: uncharacterized protein LOC105639309 isoform X2 [Jatropha curcas]
19 Hb_006185_050 0.0764822077 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
20 Hb_001541_260 0.0767122426 - - PREDICTED: protein MAK16 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_054865_100 Hb_054865_100 Hb_066182_010 Hb_066182_010 Hb_054865_100--Hb_066182_010 Hb_005276_210 Hb_005276_210 Hb_054865_100--Hb_005276_210 Hb_006620_020 Hb_006620_020 Hb_054865_100--Hb_006620_020 Hb_000327_120 Hb_000327_120 Hb_054865_100--Hb_000327_120 Hb_000174_110 Hb_000174_110 Hb_054865_100--Hb_000174_110 Hb_000645_050 Hb_000645_050 Hb_054865_100--Hb_000645_050 Hb_000300_060 Hb_000300_060 Hb_066182_010--Hb_000300_060 Hb_066182_010--Hb_005276_210 Hb_002081_130 Hb_002081_130 Hb_066182_010--Hb_002081_130 Hb_002149_020 Hb_002149_020 Hb_066182_010--Hb_002149_020 Hb_000640_240 Hb_000640_240 Hb_066182_010--Hb_000640_240 Hb_000034_100 Hb_000034_100 Hb_005276_210--Hb_000034_100 Hb_005276_210--Hb_000300_060 Hb_002477_280 Hb_002477_280 Hb_005276_210--Hb_002477_280 Hb_003952_070 Hb_003952_070 Hb_005276_210--Hb_003952_070 Hb_000853_230 Hb_000853_230 Hb_006620_020--Hb_000853_230 Hb_000879_200 Hb_000879_200 Hb_006620_020--Hb_000879_200 Hb_004055_150 Hb_004055_150 Hb_006620_020--Hb_004055_150 Hb_001926_030 Hb_001926_030 Hb_006620_020--Hb_001926_030 Hb_006620_020--Hb_000174_110 Hb_002685_140 Hb_002685_140 Hb_000327_120--Hb_002685_140 Hb_007951_060 Hb_007951_060 Hb_000327_120--Hb_007951_060 Hb_001635_170 Hb_001635_170 Hb_000327_120--Hb_001635_170 Hb_001595_030 Hb_001595_030 Hb_000327_120--Hb_001595_030 Hb_006185_050 Hb_006185_050 Hb_000327_120--Hb_006185_050 Hb_010068_040 Hb_010068_040 Hb_000174_110--Hb_010068_040 Hb_005618_160 Hb_005618_160 Hb_000174_110--Hb_005618_160 Hb_002175_030 Hb_002175_030 Hb_000174_110--Hb_002175_030 Hb_001486_340 Hb_001486_340 Hb_000174_110--Hb_001486_340 Hb_003406_010 Hb_003406_010 Hb_000645_050--Hb_003406_010 Hb_000645_050--Hb_000327_120 Hb_001369_180 Hb_001369_180 Hb_000645_050--Hb_001369_180 Hb_003030_070 Hb_003030_070 Hb_000645_050--Hb_003030_070 Hb_007218_080 Hb_007218_080 Hb_000645_050--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.71102 5.61099 4.77937 4.66335 11.9894 8.4171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.7352 8.06754 5.7485 4.53908 3.32317

CAGE analysis