Hb_054865_130

Information

Type -
Description -
Location Contig54865: 117194-118783
Sequence    

Annotation

kegg
ID rcu:RCOM_0131250
description acyltransferase, putative
nr
ID XP_002529975.1
description acyltransferase, putative [Ricinus communis]
swissprot
ID Q9MAM3
description 3-ketoacyl-CoA synthase 1 OS=Arabidopsis thaliana GN=KCS1 PE=2 SV=1
trembl
ID B9SVF6
description 3-ketoacyl-CoA synthase OS=Ricinus communis GN=RCOM_0131250 PE=3 SV=1
Gene Ontology
ID GO:0016020
description 3-ketoacyl- synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48093: 117204-117698 , PASA_asmbl_48094: 118339-118877
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_130 0.0 - - acyltransferase, putative [Ricinus communis]
2 Hb_012573_030 0.0870918876 - - conserved hypothetical protein [Ricinus communis]
3 Hb_171554_080 0.096744012 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
4 Hb_009265_060 0.1058728263 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
5 Hb_005463_020 0.1212343933 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
6 Hb_004048_050 0.1236007904 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Citrus sinensis]
7 Hb_003020_310 0.1256194361 - - glycosyltransferase, putative [Ricinus communis]
8 Hb_012522_030 0.1279578899 - - ankyrin repeat-containing protein, putative [Ricinus communis]
9 Hb_024714_060 0.133697876 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
10 Hb_000032_040 0.1343546166 - - PREDICTED: mitochondrial adenine nucleotide transporter ADNT1 [Jatropha curcas]
11 Hb_000345_030 0.1344612871 - - REF-like stress related protein 1 [Hevea brasiliensis]
12 Hb_002685_090 0.1352960137 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0004s04590g [Populus trichocarpa]
13 Hb_000419_040 0.1354909181 - - chorismate synthase [Hevea brasiliensis]
14 Hb_001006_180 0.1361542726 - - PREDICTED: endonuclease V-like [Jatropha curcas]
15 Hb_000270_410 0.1387735663 - - -
16 Hb_002539_080 0.140017879 - - PREDICTED: triose phosphate/phosphate translocator, chloroplastic-like [Jatropha curcas]
17 Hb_004738_010 0.1407648048 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
18 Hb_001141_470 0.1439699545 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
19 Hb_002119_120 0.1440606919 - - PREDICTED: anthranilate synthase beta subunit 1, chloroplastic-like [Jatropha curcas]
20 Hb_055335_010 0.1462805413 - - PREDICTED: tetraspanin-2 [Jatropha curcas]

Gene co-expression network

sample Hb_054865_130 Hb_054865_130 Hb_012573_030 Hb_012573_030 Hb_054865_130--Hb_012573_030 Hb_171554_080 Hb_171554_080 Hb_054865_130--Hb_171554_080 Hb_009265_060 Hb_009265_060 Hb_054865_130--Hb_009265_060 Hb_005463_020 Hb_005463_020 Hb_054865_130--Hb_005463_020 Hb_004048_050 Hb_004048_050 Hb_054865_130--Hb_004048_050 Hb_003020_310 Hb_003020_310 Hb_054865_130--Hb_003020_310 Hb_012573_030--Hb_171554_080 Hb_012573_030--Hb_009265_060 Hb_001006_180 Hb_001006_180 Hb_012573_030--Hb_001006_180 Hb_012573_030--Hb_004048_050 Hb_024714_060 Hb_024714_060 Hb_012573_030--Hb_024714_060 Hb_001863_480 Hb_001863_480 Hb_171554_080--Hb_001863_480 Hb_171554_080--Hb_009265_060 Hb_012522_030 Hb_012522_030 Hb_171554_080--Hb_012522_030 Hb_000419_040 Hb_000419_040 Hb_171554_080--Hb_000419_040 Hb_009265_060--Hb_024714_060 Hb_009265_060--Hb_004048_050 Hb_009265_060--Hb_000419_040 Hb_009265_060--Hb_001006_180 Hb_002026_190 Hb_002026_190 Hb_005463_020--Hb_002026_190 Hb_000062_340 Hb_000062_340 Hb_005463_020--Hb_000062_340 Hb_002539_080 Hb_002539_080 Hb_005463_020--Hb_002539_080 Hb_010589_040 Hb_010589_040 Hb_005463_020--Hb_010589_040 Hb_000260_060 Hb_000260_060 Hb_005463_020--Hb_000260_060 Hb_004048_050--Hb_024714_060 Hb_004048_050--Hb_171554_080 Hb_012725_110 Hb_012725_110 Hb_004048_050--Hb_012725_110 Hb_007120_070 Hb_007120_070 Hb_003020_310--Hb_007120_070 Hb_078633_010 Hb_078633_010 Hb_003020_310--Hb_078633_010 Hb_000077_410 Hb_000077_410 Hb_003020_310--Hb_000077_410 Hb_023214_010 Hb_023214_010 Hb_003020_310--Hb_023214_010 Hb_148121_010 Hb_148121_010 Hb_003020_310--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_003020_310--Hb_001035_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.4592 4.23292 5.40585 20.0645 21.4454 35.9926
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.466 82.5282 152.273 6.26983 13.7349

CAGE analysis