Hb_054865_150

Information

Type -
Description -
Location Contig54865: 121490-126384
Sequence    

Annotation

kegg
ID pop:POPTR_0014s10030g
description POPTRDRAFT_1098712; RNA recognition motif-containing family protein
nr
ID XP_012083114.1
description PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
swissprot
ID O60506
description Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens GN=SYNCRIP PE=1 SV=2
trembl
ID A0A067JWS3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14197 PE=4 SV=1
Gene Ontology
ID GO:0000166
description heterogeneous nuclear ribonucleoprotein r

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48096: 121271-126178 , PASA_asmbl_48097: 121271-126268 , PASA_asmbl_48098: 121542-126262 , PASA_asmbl_48100: 125251-126246
cDNA
(Sanger)
(ID:Location)		 023_I23.ab1: 124642-126262 , 029_N04.ab1: 124698-126257

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054865_150 0.0 - - PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Jatropha curcas]
2 Hb_011037_030 0.0506432934 - - PREDICTED: uncharacterized protein LOC105641407 [Jatropha curcas]
3 Hb_000156_010 0.0516620838 - - phospho-n-acetylmuramoyl-pentapeptide-transferase, putative [Ricinus communis]
4 Hb_000172_290 0.0564649621 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
5 Hb_000254_090 0.0580282015 - - PREDICTED: la protein 2 [Jatropha curcas]
6 Hb_000318_290 0.0595363185 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
7 Hb_002110_190 0.059582057 - - PREDICTED: pentatricopeptide repeat-containing protein At5g27460 [Jatropha curcas]
8 Hb_003750_050 0.0600701539 - - PREDICTED: THO complex subunit 4D isoform X1 [Jatropha curcas]
9 Hb_007479_040 0.0616940238 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004567_090 0.0627315119 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
11 Hb_005291_050 0.0644928658 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
12 Hb_002740_180 0.0660288492 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007638_030 0.0691066497 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
14 Hb_000127_040 0.0692972894 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
15 Hb_000331_260 0.0698216399 - - PREDICTED: WD repeat-containing protein 74 isoform X2 [Jatropha curcas]
16 Hb_000181_130 0.0708707006 - - ATP binding protein, putative [Ricinus communis]
17 Hb_010964_040 0.071018575 - - Eukaryotic initiation factor 4A-3 [Gossypium arboreum]
18 Hb_012498_010 0.0720946551 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
19 Hb_004109_080 0.0724756975 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
20 Hb_000009_560 0.0729167557 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_054865_150 Hb_054865_150 Hb_011037_030 Hb_011037_030 Hb_054865_150--Hb_011037_030 Hb_000156_010 Hb_000156_010 Hb_054865_150--Hb_000156_010 Hb_000172_290 Hb_000172_290 Hb_054865_150--Hb_000172_290 Hb_000254_090 Hb_000254_090 Hb_054865_150--Hb_000254_090 Hb_000318_290 Hb_000318_290 Hb_054865_150--Hb_000318_290 Hb_002110_190 Hb_002110_190 Hb_054865_150--Hb_002110_190 Hb_011037_030--Hb_000156_010 Hb_006455_120 Hb_006455_120 Hb_011037_030--Hb_006455_120 Hb_000345_380 Hb_000345_380 Hb_011037_030--Hb_000345_380 Hb_105328_020 Hb_105328_020 Hb_011037_030--Hb_105328_020 Hb_003750_050 Hb_003750_050 Hb_011037_030--Hb_003750_050 Hb_000156_010--Hb_003750_050 Hb_012498_010 Hb_012498_010 Hb_000156_010--Hb_012498_010 Hb_000156_010--Hb_105328_020 Hb_005291_050 Hb_005291_050 Hb_000156_010--Hb_005291_050 Hb_000172_290--Hb_000254_090 Hb_026198_070 Hb_026198_070 Hb_000172_290--Hb_026198_070 Hb_002685_210 Hb_002685_210 Hb_000172_290--Hb_002685_210 Hb_006478_020 Hb_006478_020 Hb_000172_290--Hb_006478_020 Hb_001971_010 Hb_001971_010 Hb_000172_290--Hb_001971_010 Hb_029879_070 Hb_029879_070 Hb_000254_090--Hb_029879_070 Hb_000254_090--Hb_026198_070 Hb_029510_050 Hb_029510_050 Hb_000254_090--Hb_029510_050 Hb_000254_090--Hb_000156_010 Hb_003777_310 Hb_003777_310 Hb_000318_290--Hb_003777_310 Hb_000608_320 Hb_000608_320 Hb_000318_290--Hb_000608_320 Hb_004032_150 Hb_004032_150 Hb_000318_290--Hb_004032_150 Hb_000120_670 Hb_000120_670 Hb_000318_290--Hb_000120_670 Hb_004767_100 Hb_004767_100 Hb_000318_290--Hb_004767_100 Hb_007479_040 Hb_007479_040 Hb_002110_190--Hb_007479_040 Hb_004567_090 Hb_004567_090 Hb_002110_190--Hb_004567_090 Hb_002110_190--Hb_011037_030 Hb_002110_190--Hb_026198_070 Hb_003680_120 Hb_003680_120 Hb_002110_190--Hb_003680_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2251 11.6613 10.6658 19.9151 16.9119 24.8146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3273 17.4235 19.1457 16.0355 17.5074

CAGE analysis