Hb_054885_010

Information

Type -
Description -
Location Contig54885: 842-3828
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48142: 2471-3408
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_054885_010 0.0 - - -
2 Hb_142751_010 0.1805125552 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000886_060 0.189153766 - - PREDICTED: serine/threonine-protein kinase SAPK10 isoform X2 [Vitis vinifera]
4 Hb_011953_030 0.1946088287 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
5 Hb_003376_070 0.1958327076 - - hypothetical protein B456_009G419800 [Gossypium raimondii]
6 Hb_000056_230 0.1977466045 transcription factor TF Family: TCP hypothetical protein JCGZ_15588 [Jatropha curcas]
7 Hb_000329_420 0.2033870905 - - Nuc-1 negative regulatory protein preg, putative [Ricinus communis]
8 Hb_030328_010 0.2084564082 - - hypothetical protein CICLE_v10015936mg [Citrus clementina]
9 Hb_151463_010 0.2109564299 - - hypothetical protein B456_004G013100 [Gossypium raimondii]
10 Hb_001040_120 0.215865896 - - allantoinase, putative [Ricinus communis]
11 Hb_002111_060 0.2163769438 - - PREDICTED: toll-like receptor 13 [Jatropha curcas]
12 Hb_068569_010 0.2169260324 - - -
13 Hb_001128_060 0.218483698 - - amino acid permease, putative [Ricinus communis]
14 Hb_015026_060 0.2200231773 - - PREDICTED: uncharacterized protein LOC105649473 [Jatropha curcas]
15 Hb_099046_010 0.2214069875 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
16 Hb_000086_100 0.2222385107 - - hypothetical protein POPTR_0005s24730g [Populus trichocarpa]
17 Hb_065841_010 0.2235464852 - - hypothetical protein JCGZ_18376 [Jatropha curcas]
18 Hb_001916_120 0.2277248301 - - snf1-kinase beta subunit, plants, putative [Ricinus communis]
19 Hb_001052_040 0.2280076254 - - Ferredoxin-3, chloroplast precursor, putative [Ricinus communis]
20 Hb_088428_010 0.2281381745 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_054885_010 Hb_054885_010 Hb_142751_010 Hb_142751_010 Hb_054885_010--Hb_142751_010 Hb_000886_060 Hb_000886_060 Hb_054885_010--Hb_000886_060 Hb_011953_030 Hb_011953_030 Hb_054885_010--Hb_011953_030 Hb_003376_070 Hb_003376_070 Hb_054885_010--Hb_003376_070 Hb_000056_230 Hb_000056_230 Hb_054885_010--Hb_000056_230 Hb_000329_420 Hb_000329_420 Hb_054885_010--Hb_000329_420 Hb_015354_010 Hb_015354_010 Hb_142751_010--Hb_015354_010 Hb_000429_250 Hb_000429_250 Hb_142751_010--Hb_000429_250 Hb_001623_300 Hb_001623_300 Hb_142751_010--Hb_001623_300 Hb_001767_120 Hb_001767_120 Hb_142751_010--Hb_001767_120 Hb_088428_010 Hb_088428_010 Hb_142751_010--Hb_088428_010 Hb_001623_290 Hb_001623_290 Hb_142751_010--Hb_001623_290 Hb_001052_040 Hb_001052_040 Hb_000886_060--Hb_001052_040 Hb_073973_160 Hb_073973_160 Hb_000886_060--Hb_073973_160 Hb_010584_010 Hb_010584_010 Hb_000886_060--Hb_010584_010 Hb_002002_030 Hb_002002_030 Hb_000886_060--Hb_002002_030 Hb_000331_160 Hb_000331_160 Hb_000886_060--Hb_000331_160 Hb_000261_290 Hb_000261_290 Hb_000886_060--Hb_000261_290 Hb_002742_070 Hb_002742_070 Hb_011953_030--Hb_002742_070 Hb_000330_160 Hb_000330_160 Hb_011953_030--Hb_000330_160 Hb_000997_410 Hb_000997_410 Hb_011953_030--Hb_000997_410 Hb_001040_120 Hb_001040_120 Hb_011953_030--Hb_001040_120 Hb_002815_060 Hb_002815_060 Hb_011953_030--Hb_002815_060 Hb_003436_050 Hb_003436_050 Hb_011953_030--Hb_003436_050 Hb_003157_030 Hb_003157_030 Hb_003376_070--Hb_003157_030 Hb_003492_010 Hb_003492_010 Hb_003376_070--Hb_003492_010 Hb_002411_130 Hb_002411_130 Hb_003376_070--Hb_002411_130 Hb_009119_030 Hb_009119_030 Hb_003376_070--Hb_009119_030 Hb_003376_070--Hb_002742_070 Hb_130134_030 Hb_130134_030 Hb_003376_070--Hb_130134_030 Hb_128496_010 Hb_128496_010 Hb_000056_230--Hb_128496_010 Hb_000056_230--Hb_000329_420 Hb_004218_070 Hb_004218_070 Hb_000056_230--Hb_004218_070 Hb_099046_010 Hb_099046_010 Hb_000056_230--Hb_099046_010 Hb_004662_010 Hb_004662_010 Hb_000056_230--Hb_004662_010 Hb_008406_140 Hb_008406_140 Hb_000056_230--Hb_008406_140 Hb_000215_260 Hb_000215_260 Hb_000329_420--Hb_000215_260 Hb_001916_120 Hb_001916_120 Hb_000329_420--Hb_001916_120 Hb_000056_120 Hb_000056_120 Hb_000329_420--Hb_000056_120 Hb_000252_090 Hb_000252_090 Hb_000329_420--Hb_000252_090 Hb_002265_030 Hb_002265_030 Hb_000329_420--Hb_002265_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.9287 24.6151 5.02449 58.4718 32.8588 73.1671
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.3058 4.31139 16.2411 8.50799 1.35114

CAGE analysis