Hb_055062_020

Information

Type -
Description -
Location Contig55062: 8451-10390
Sequence    

Annotation

kegg
ID vvi:100258134
description 60S ribosomal protein L35a-1
nr
ID KHG28839.1
description 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
swissprot
ID Q9C912
description 60S ribosomal protein L35a-3 OS=Arabidopsis thaliana GN=RPL35AC PE=3 SV=1
trembl
ID F6HNM2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_13s0019g03260 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l35a-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48259: 9048-10352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055062_020 0.0 - - 60S ribosomal L35a-3 -like protein [Gossypium arboreum]
2 Hb_000317_390 0.0804843899 - - PREDICTED: vesicle transport protein SFT2B [Jatropha curcas]
3 Hb_000403_060 0.0816618395 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
4 Hb_003849_130 0.0816704385 - - PREDICTED: probable protein phosphatase 2C 14 [Jatropha curcas]
5 Hb_001341_150 0.0819878492 - - PREDICTED: proteasome subunit beta type-4-like [Jatropha curcas]
6 Hb_000261_140 0.0870350499 - - -
7 Hb_026889_030 0.0909711673 - - protein with unknown function [Ricinus communis]
8 Hb_003018_010 0.0911020867 - - PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Jatropha curcas]
9 Hb_028396_010 0.0915062258 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]
10 Hb_157022_010 0.0921083696 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
11 Hb_008071_020 0.0925202739 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
12 Hb_003362_030 0.093035469 - - hypothetical protein POPTR_0017s08440g [Populus trichocarpa]
13 Hb_004889_020 0.0931119281 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
14 Hb_001016_150 0.0946364472 - - Rop1 [Hevea brasiliensis]
15 Hb_000045_310 0.0946930739 - - PREDICTED: probable signal peptidase complex subunit 2 [Jatropha curcas]
16 Hb_000803_200 0.0947145022 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
17 Hb_000189_240 0.0947677602 - - PREDICTED: PITH domain-containing protein At3g04780 [Jatropha curcas]
18 Hb_001123_130 0.0974640407 transcription factor TF Family: C3H nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000836_470 0.0975665073 - - -
20 Hb_001195_480 0.0975741612 - - cop9 complex subunit, putative [Ricinus communis]

Gene co-expression network

sample Hb_055062_020 Hb_055062_020 Hb_000317_390 Hb_000317_390 Hb_055062_020--Hb_000317_390 Hb_000403_060 Hb_000403_060 Hb_055062_020--Hb_000403_060 Hb_003849_130 Hb_003849_130 Hb_055062_020--Hb_003849_130 Hb_001341_150 Hb_001341_150 Hb_055062_020--Hb_001341_150 Hb_000261_140 Hb_000261_140 Hb_055062_020--Hb_000261_140 Hb_026889_030 Hb_026889_030 Hb_055062_020--Hb_026889_030 Hb_152784_010 Hb_152784_010 Hb_000317_390--Hb_152784_010 Hb_000331_200 Hb_000331_200 Hb_000317_390--Hb_000331_200 Hb_001318_250 Hb_001318_250 Hb_000317_390--Hb_001318_250 Hb_000045_310 Hb_000045_310 Hb_000317_390--Hb_000045_310 Hb_004108_070 Hb_004108_070 Hb_000317_390--Hb_004108_070 Hb_006693_020 Hb_006693_020 Hb_000317_390--Hb_006693_020 Hb_000175_340 Hb_000175_340 Hb_000403_060--Hb_000175_340 Hb_157022_010 Hb_157022_010 Hb_000403_060--Hb_157022_010 Hb_000638_250 Hb_000638_250 Hb_000403_060--Hb_000638_250 Hb_007044_120 Hb_007044_120 Hb_000403_060--Hb_007044_120 Hb_148121_040 Hb_148121_040 Hb_000403_060--Hb_148121_040 Hb_003057_090 Hb_003057_090 Hb_003849_130--Hb_003057_090 Hb_000694_040 Hb_000694_040 Hb_003849_130--Hb_000694_040 Hb_010577_030 Hb_010577_030 Hb_003849_130--Hb_010577_030 Hb_004041_020 Hb_004041_020 Hb_003849_130--Hb_004041_020 Hb_002374_570 Hb_002374_570 Hb_003849_130--Hb_002374_570 Hb_001931_010 Hb_001931_010 Hb_001341_150--Hb_001931_010 Hb_010098_050 Hb_010098_050 Hb_001341_150--Hb_010098_050 Hb_006615_240 Hb_006615_240 Hb_001341_150--Hb_006615_240 Hb_000457_180 Hb_000457_180 Hb_001341_150--Hb_000457_180 Hb_002078_140 Hb_002078_140 Hb_001341_150--Hb_002078_140 Hb_028396_010 Hb_028396_010 Hb_001341_150--Hb_028396_010 Hb_010175_040 Hb_010175_040 Hb_000261_140--Hb_010175_040 Hb_001123_130 Hb_001123_130 Hb_000261_140--Hb_001123_130 Hb_000920_110 Hb_000920_110 Hb_000261_140--Hb_000920_110 Hb_001484_070 Hb_001484_070 Hb_000261_140--Hb_001484_070 Hb_000261_140--Hb_000638_250 Hb_004143_150 Hb_004143_150 Hb_000261_140--Hb_004143_150 Hb_028872_080 Hb_028872_080 Hb_026889_030--Hb_028872_080 Hb_004889_020 Hb_004889_020 Hb_026889_030--Hb_004889_020 Hb_008071_020 Hb_008071_020 Hb_026889_030--Hb_008071_020 Hb_010361_010 Hb_010361_010 Hb_026889_030--Hb_010361_010 Hb_000827_050 Hb_000827_050 Hb_026889_030--Hb_000827_050 Hb_000676_390 Hb_000676_390 Hb_026889_030--Hb_000676_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
51.2542 24.5222 103.952 90.2131 62.257 62.5876
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
104.407 159.545 92.2829 57.9838 29.3332

CAGE analysis