Hb_055062_030

Information

Type -
Description -
Location Contig55062: 10786-14175
Sequence    

Annotation

kegg
ID rcu:RCOM_0085590
description nut2, putative
nr
ID XP_012087937.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
swissprot
ID F4HPA7
description Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1
trembl
ID A0A067JKT2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25066 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 10b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48260: 12656-14996 , PASA_asmbl_48261: 10930-13064 , PASA_asmbl_48262: 10888-14989
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055062_030 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
2 Hb_016065_010 0.0604353693 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
3 Hb_005488_010 0.0621154772 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001671_020 0.0621701286 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08510 [Jatropha curcas]
5 Hb_008289_060 0.0627894122 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
6 Hb_000567_260 0.0668480399 - - BnaA09g41440D [Brassica napus]
7 Hb_008453_090 0.0671916753 - - hypothetical protein JCGZ_08177 [Jatropha curcas]
8 Hb_000205_270 0.0679603075 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
9 Hb_000009_160 0.0685726423 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
10 Hb_021650_030 0.0735362384 - - PREDICTED: uncharacterized protein LOC105642056 [Jatropha curcas]
11 Hb_000834_270 0.0738875938 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
12 Hb_000457_150 0.0744431739 - - PREDICTED: transcription factor GTE8-like [Jatropha curcas]
13 Hb_000146_020 0.074480364 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
14 Hb_000754_040 0.0746349675 - - PREDICTED: uncharacterized protein LOC105115746 [Populus euphratica]
15 Hb_001863_390 0.0749456433 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
16 Hb_005532_060 0.0759221462 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
17 Hb_189003_080 0.0759324021 - - PREDICTED: rab3 GTPase-activating protein non-catalytic subunit isoform X1 [Jatropha curcas]
18 Hb_004951_040 0.0760669133 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
19 Hb_003018_200 0.0777071024 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
20 Hb_000193_290 0.078948707 - - hypothetical protein JCGZ_11661 [Jatropha curcas]

Gene co-expression network

sample Hb_055062_030 Hb_055062_030 Hb_016065_010 Hb_016065_010 Hb_055062_030--Hb_016065_010 Hb_005488_010 Hb_005488_010 Hb_055062_030--Hb_005488_010 Hb_001671_020 Hb_001671_020 Hb_055062_030--Hb_001671_020 Hb_008289_060 Hb_008289_060 Hb_055062_030--Hb_008289_060 Hb_000567_260 Hb_000567_260 Hb_055062_030--Hb_000567_260 Hb_008453_090 Hb_008453_090 Hb_055062_030--Hb_008453_090 Hb_000205_270 Hb_000205_270 Hb_016065_010--Hb_000205_270 Hb_016065_010--Hb_005488_010 Hb_016065_010--Hb_008453_090 Hb_009486_130 Hb_009486_130 Hb_016065_010--Hb_009486_130 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_005488_010--Hb_000205_270 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_005488_010--Hb_008289_060 Hb_001671_020--Hb_000567_260 Hb_007380_070 Hb_007380_070 Hb_001671_020--Hb_007380_070 Hb_002603_100 Hb_002603_100 Hb_001671_020--Hb_002603_100 Hb_189003_080 Hb_189003_080 Hb_001671_020--Hb_189003_080 Hb_001243_050 Hb_001243_050 Hb_001671_020--Hb_001243_050 Hb_000030_100 Hb_000030_100 Hb_008289_060--Hb_000030_100 Hb_004951_040 Hb_004951_040 Hb_008289_060--Hb_004951_040 Hb_007943_090 Hb_007943_090 Hb_008289_060--Hb_007943_090 Hb_000146_020 Hb_000146_020 Hb_008289_060--Hb_000146_020 Hb_002918_200 Hb_002918_200 Hb_008289_060--Hb_002918_200 Hb_000614_230 Hb_000614_230 Hb_000567_260--Hb_000614_230 Hb_001329_300 Hb_001329_300 Hb_000567_260--Hb_001329_300 Hb_000567_260--Hb_189003_080 Hb_001248_130 Hb_001248_130 Hb_000567_260--Hb_001248_130 Hb_008453_090--Hb_004951_040 Hb_000193_290 Hb_000193_290 Hb_008453_090--Hb_000193_290 Hb_003018_200 Hb_003018_200 Hb_008453_090--Hb_003018_200 Hb_005333_130 Hb_005333_130 Hb_008453_090--Hb_005333_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
86.0619 49.1078 27.4623 30.0478 76.8666 96.8835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
133.189 144.569 159.325 42.2112 35.6567

CAGE analysis