Hb_055147_020

Information

Type -
Description -
Location Contig55147: 1763-3131
Sequence    

Annotation

kegg
ID rcu:RCOM_1494400
description serine-threonine protein kinase, plant-type, putative (EC:2.7.11.13)
nr
ID KCW82440.1
description hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
swissprot
ID Q9LV48
description Proline-rich receptor-like protein kinase PERK1 OS=Arabidopsis thaliana GN=PERK1 PE=2 SV=1
trembl
ID A0A059CWY8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C03837 PE=3 SV=1
Gene Ontology
ID GO:0004672
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055147_020 0.0 - - hypothetical protein EUGRSUZ_C03837 [Eucalyptus grandis]
2 Hb_001416_170 0.0932461483 - - kinase, putative [Ricinus communis]
3 Hb_000172_310 0.1189912074 - - PREDICTED: fasciclin-like arabinogalactan protein 21 [Jatropha curcas]
4 Hb_000975_130 0.125188328 - - PREDICTED: uncharacterized protein LOC104445138 [Eucalyptus grandis]
5 Hb_004218_220 0.1320560409 - - o-methyltransferase, putative [Ricinus communis]
6 Hb_096878_010 0.13229052 - - hypothetical protein POPTR_0112s002001g, partial [Populus trichocarpa]
7 Hb_000111_120 0.1327586026 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
8 Hb_000853_010 0.1380801716 - - Pectinesterase-3 precursor, putative [Ricinus communis]
9 Hb_000509_090 0.1407683553 - - Reticuline oxidase precursor, putative [Ricinus communis]
10 Hb_006834_010 0.1451740372 - - conserved hypothetical protein [Ricinus communis]
11 Hb_015934_100 0.1461553035 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
12 Hb_133508_020 0.146658434 - - PREDICTED: L-ascorbate oxidase homolog [Jatropha curcas]
13 Hb_185830_090 0.1574833234 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000635_190 0.1606878605 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103322127 [Prunus mume]
15 Hb_146901_020 0.1630115712 - - -
16 Hb_011206_050 0.1645434766 - - hypothetical protein POPTR_0011s02840g [Populus trichocarpa]
17 Hb_001989_040 0.165037003 - - PREDICTED: neurofilament heavy polypeptide [Jatropha curcas]
18 Hb_003768_110 0.1657471796 - - hypothetical protein POPTR_0004s12230g [Populus trichocarpa]
19 Hb_000479_230 0.1665048521 - - hypothetical protein JCGZ_19903 [Jatropha curcas]
20 Hb_000956_060 0.1671711578 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_055147_020 Hb_055147_020 Hb_001416_170 Hb_001416_170 Hb_055147_020--Hb_001416_170 Hb_000172_310 Hb_000172_310 Hb_055147_020--Hb_000172_310 Hb_000975_130 Hb_000975_130 Hb_055147_020--Hb_000975_130 Hb_004218_220 Hb_004218_220 Hb_055147_020--Hb_004218_220 Hb_096878_010 Hb_096878_010 Hb_055147_020--Hb_096878_010 Hb_000111_120 Hb_000111_120 Hb_055147_020--Hb_000111_120 Hb_000853_010 Hb_000853_010 Hb_001416_170--Hb_000853_010 Hb_006834_010 Hb_006834_010 Hb_001416_170--Hb_006834_010 Hb_001416_170--Hb_000975_130 Hb_004984_020 Hb_004984_020 Hb_001416_170--Hb_004984_020 Hb_055440_010 Hb_055440_010 Hb_001416_170--Hb_055440_010 Hb_000172_310--Hb_004218_220 Hb_000172_310--Hb_096878_010 Hb_000635_190 Hb_000635_190 Hb_000172_310--Hb_000635_190 Hb_006721_060 Hb_006721_060 Hb_000172_310--Hb_006721_060 Hb_004096_140 Hb_004096_140 Hb_000172_310--Hb_004096_140 Hb_000956_060 Hb_000956_060 Hb_000975_130--Hb_000956_060 Hb_003811_050 Hb_003811_050 Hb_000975_130--Hb_003811_050 Hb_005672_030 Hb_005672_030 Hb_000975_130--Hb_005672_030 Hb_000975_130--Hb_000853_010 Hb_000676_130 Hb_000676_130 Hb_000975_130--Hb_000676_130 Hb_004631_030 Hb_004631_030 Hb_000975_130--Hb_004631_030 Hb_002044_110 Hb_002044_110 Hb_004218_220--Hb_002044_110 Hb_002894_040 Hb_002894_040 Hb_004218_220--Hb_002894_040 Hb_008959_050 Hb_008959_050 Hb_004218_220--Hb_008959_050 Hb_011206_050 Hb_011206_050 Hb_004218_220--Hb_011206_050 Hb_096878_010--Hb_000635_190 Hb_185830_090 Hb_185830_090 Hb_096878_010--Hb_185830_090 Hb_096878_010--Hb_006721_060 Hb_003050_170 Hb_003050_170 Hb_096878_010--Hb_003050_170 Hb_133508_020 Hb_133508_020 Hb_096878_010--Hb_133508_020 Hb_000509_090 Hb_000509_090 Hb_000111_120--Hb_000509_090 Hb_001989_040 Hb_001989_040 Hb_000111_120--Hb_001989_040 Hb_004631_100 Hb_004631_100 Hb_000111_120--Hb_004631_100 Hb_010164_020 Hb_010164_020 Hb_000111_120--Hb_010164_020 Hb_000631_100 Hb_000631_100 Hb_000111_120--Hb_000631_100 Hb_001776_070 Hb_001776_070 Hb_000111_120--Hb_001776_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0239119 0.0429587 0.07167 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0417501 0

CAGE analysis