Hb_055259_010

Information

Type -
Description -
Location Contig55259: 463-964
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055259_010 0.0 - - -
2 Hb_000206_220 0.1280797857 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
3 Hb_002805_290 0.130928751 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
4 Hb_003106_140 0.1416550953 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001999_120 0.1434720145 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
6 Hb_003751_120 0.1451075063 - - -
7 Hb_005618_040 0.1504940028 - - -
8 Hb_002235_400 0.1507605777 - - PREDICTED: uncharacterized protein At5g19025-like isoform X1 [Populus euphratica]
9 Hb_060668_010 0.1582159439 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_003540_230 0.1603050813 - - PREDICTED: sphingosine kinase 1 isoform X1 [Jatropha curcas]
11 Hb_000510_100 0.1639831735 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_048141_010 0.1640289048 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 2 [Jatropha curcas]
13 Hb_029584_140 0.1652417126 - - senescence-associated family protein [Populus trichocarpa]
14 Hb_042729_010 0.1661856068 - - -
15 Hb_006831_010 0.1662446173 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_008847_010 0.1670157024 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
17 Hb_003038_180 0.1684349019 - - PREDICTED: uncharacterized protein LOC105649131 [Jatropha curcas]
18 Hb_030765_020 0.1700082861 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_008695_190 0.1716371981 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
20 Hb_004116_040 0.1754837666 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]

Gene co-expression network

sample Hb_055259_010 Hb_055259_010 Hb_000206_220 Hb_000206_220 Hb_055259_010--Hb_000206_220 Hb_002805_290 Hb_002805_290 Hb_055259_010--Hb_002805_290 Hb_003106_140 Hb_003106_140 Hb_055259_010--Hb_003106_140 Hb_001999_120 Hb_001999_120 Hb_055259_010--Hb_001999_120 Hb_003751_120 Hb_003751_120 Hb_055259_010--Hb_003751_120 Hb_005618_040 Hb_005618_040 Hb_055259_010--Hb_005618_040 Hb_003540_230 Hb_003540_230 Hb_000206_220--Hb_003540_230 Hb_048141_010 Hb_048141_010 Hb_000206_220--Hb_048141_010 Hb_010578_090 Hb_010578_090 Hb_000206_220--Hb_010578_090 Hb_005016_130 Hb_005016_130 Hb_000206_220--Hb_005016_130 Hb_060668_010 Hb_060668_010 Hb_000206_220--Hb_060668_010 Hb_004116_040 Hb_004116_040 Hb_002805_290--Hb_004116_040 Hb_002235_400 Hb_002235_400 Hb_002805_290--Hb_002235_400 Hb_002805_290--Hb_003106_140 Hb_003680_070 Hb_003680_070 Hb_002805_290--Hb_003680_070 Hb_000700_130 Hb_000700_130 Hb_002805_290--Hb_000700_130 Hb_004206_030 Hb_004206_030 Hb_003106_140--Hb_004206_030 Hb_003106_140--Hb_060668_010 Hb_000032_220 Hb_000032_220 Hb_003106_140--Hb_000032_220 Hb_002387_060 Hb_002387_060 Hb_003106_140--Hb_002387_060 Hb_001514_180 Hb_001514_180 Hb_003106_140--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_003106_140--Hb_000041_070 Hb_003038_180 Hb_003038_180 Hb_001999_120--Hb_003038_180 Hb_001722_040 Hb_001722_040 Hb_001999_120--Hb_001722_040 Hb_000062_580 Hb_000062_580 Hb_001999_120--Hb_000062_580 Hb_025087_010 Hb_025087_010 Hb_001999_120--Hb_025087_010 Hb_001999_120--Hb_005618_040 Hb_000926_290 Hb_000926_290 Hb_001999_120--Hb_000926_290 Hb_031403_010 Hb_031403_010 Hb_003751_120--Hb_031403_010 Hb_000304_020 Hb_000304_020 Hb_003751_120--Hb_000304_020 Hb_030765_020 Hb_030765_020 Hb_003751_120--Hb_030765_020 Hb_003751_120--Hb_005618_040 Hb_003751_120--Hb_025087_010 Hb_000085_300 Hb_000085_300 Hb_003751_120--Hb_000085_300 Hb_000261_460 Hb_000261_460 Hb_005618_040--Hb_000261_460 Hb_007666_020 Hb_007666_020 Hb_005618_040--Hb_007666_020 Hb_005618_040--Hb_025087_010 Hb_001153_200 Hb_001153_200 Hb_005618_040--Hb_001153_200 Hb_000051_040 Hb_000051_040 Hb_005618_040--Hb_000051_040 Hb_000922_270 Hb_000922_270 Hb_005618_040--Hb_000922_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.51361 0.201163 0 0.129678 0.595718 0.816537
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.72664 0.999432 1.15927 0.667124 0

CAGE analysis