Hb_055690_010

Information

Type -
Description -
Location Contig55690: 9665-18135
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05960g
description POPTRDRAFT_821437; hypothetical protein
nr
ID XP_012081014.1
description PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
swissprot
ID Q9FFZ1
description Pheophytinase, chloroplastic OS=Arabidopsis thaliana GN=PPH PE=1 SV=1
trembl
ID A0A067K2U2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17135 PE=4 SV=1
Gene Ontology
ID GO:0009507
description chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48595: 9680-18120 , PASA_asmbl_48597: 14135-14353
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055690_010 0.0 - - PREDICTED: pheophytinase, chloroplastic [Jatropha curcas]
2 Hb_000585_110 0.0594954651 - - PREDICTED: probable protein phosphatase 2C 66 [Jatropha curcas]
3 Hb_030736_040 0.061360663 - - PREDICTED: uncharacterized protein LOC105638926 isoform X1 [Jatropha curcas]
4 Hb_000358_020 0.063096957 - - PREDICTED: uncharacterized protein C05D11.7-like [Jatropha curcas]
5 Hb_002150_020 0.0647612424 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_008375_010 0.0700914828 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
7 Hb_005571_010 0.0720659015 - - PREDICTED: 15-cis-phytoene desaturase, chloroplastic/chromoplastic [Jatropha curcas]
8 Hb_000909_080 0.0730912117 - - PREDICTED: inosine-5'-monophosphate dehydrogenase 2-like [Jatropha curcas]
9 Hb_008705_020 0.0734404645 - - PREDICTED: lisH domain and HEAT repeat-containing protein KIAA1468 homolog isoform X1 [Jatropha curcas]
10 Hb_007441_310 0.0757610466 - - PREDICTED: protein TRIGALACTOSYLDIACYLGLYCEROL 4, chloroplastic [Jatropha curcas]
11 Hb_106890_010 0.0777037037 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X2 [Jatropha curcas]
12 Hb_001117_110 0.0802895559 - - PREDICTED: dynamin-2A [Jatropha curcas]
13 Hb_003355_010 0.0805720308 - - Heat shock 70 kDa protein, putative [Ricinus communis]
14 Hb_003440_020 0.0808234171 - - PREDICTED: serine protease SPPA, chloroplastic isoform X2 [Jatropha curcas]
15 Hb_002249_080 0.0838060387 - - lysosomal alpha-mannosidase, putative [Ricinus communis]
16 Hb_004957_030 0.0869820453 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
17 Hb_023988_030 0.0870045786 - - PREDICTED: transmembrane protein 19 [Vitis vinifera]
18 Hb_001195_770 0.0878122438 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Jatropha curcas]
19 Hb_000417_390 0.0881124671 - - PREDICTED: ER lumen protein-retaining receptor A [Jatropha curcas]
20 Hb_005305_020 0.0886033298 - - PREDICTED: dicarboxylate transporter 1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_055690_010 Hb_055690_010 Hb_000585_110 Hb_000585_110 Hb_055690_010--Hb_000585_110 Hb_030736_040 Hb_030736_040 Hb_055690_010--Hb_030736_040 Hb_000358_020 Hb_000358_020 Hb_055690_010--Hb_000358_020 Hb_002150_020 Hb_002150_020 Hb_055690_010--Hb_002150_020 Hb_008375_010 Hb_008375_010 Hb_055690_010--Hb_008375_010 Hb_005571_010 Hb_005571_010 Hb_055690_010--Hb_005571_010 Hb_002249_080 Hb_002249_080 Hb_000585_110--Hb_002249_080 Hb_000007_090 Hb_000007_090 Hb_000585_110--Hb_000007_090 Hb_007441_310 Hb_007441_310 Hb_000585_110--Hb_007441_310 Hb_019654_020 Hb_019654_020 Hb_000585_110--Hb_019654_020 Hb_000417_390 Hb_000417_390 Hb_000585_110--Hb_000417_390 Hb_001117_110 Hb_001117_110 Hb_030736_040--Hb_001117_110 Hb_106890_010 Hb_106890_010 Hb_030736_040--Hb_106890_010 Hb_003355_010 Hb_003355_010 Hb_030736_040--Hb_003355_010 Hb_068804_090 Hb_068804_090 Hb_030736_040--Hb_068804_090 Hb_008705_020 Hb_008705_020 Hb_030736_040--Hb_008705_020 Hb_000909_080 Hb_000909_080 Hb_000358_020--Hb_000909_080 Hb_003440_020 Hb_003440_020 Hb_000358_020--Hb_003440_020 Hb_005218_080 Hb_005218_080 Hb_000358_020--Hb_005218_080 Hb_000035_350 Hb_000035_350 Hb_000358_020--Hb_000035_350 Hb_000358_020--Hb_030736_040 Hb_004041_030 Hb_004041_030 Hb_002150_020--Hb_004041_030 Hb_002150_020--Hb_005571_010 Hb_001009_260 Hb_001009_260 Hb_002150_020--Hb_001009_260 Hb_032631_070 Hb_032631_070 Hb_002150_020--Hb_032631_070 Hb_005305_020 Hb_005305_020 Hb_002150_020--Hb_005305_020 Hb_008375_010--Hb_007441_310 Hb_008375_010--Hb_000585_110 Hb_008147_080 Hb_008147_080 Hb_008375_010--Hb_008147_080 Hb_002075_030 Hb_002075_030 Hb_008375_010--Hb_002075_030 Hb_000008_350 Hb_000008_350 Hb_008375_010--Hb_000008_350 Hb_023988_030 Hb_023988_030 Hb_005571_010--Hb_023988_030 Hb_005571_010--Hb_106890_010 Hb_005571_010--Hb_003355_010 Hb_005914_040 Hb_005914_040 Hb_005571_010--Hb_005914_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.44046 8.1909 14.5529 17.4839 4.3512 5.53743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87388 7.97609 7.02406 11.9789 27.6114

CAGE analysis