Hb_055706_010

Information

Type -
Description -
Location Contig55706: 119-8227
Sequence    

Annotation

kegg
ID rcu:RCOM_0576180
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID KDP26121.1
description hypothetical protein JCGZ_22222 [Jatropha curcas]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID A0A067JQ86
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_22222 PE=3 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055706_010 0.0 - - hypothetical protein JCGZ_22222 [Jatropha curcas]
2 Hb_005882_020 0.0904800839 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
3 Hb_089140_020 0.0923538776 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
4 Hb_035391_010 0.1051784322 - - TMV resistance protein N, putative [Ricinus communis]
5 Hb_000522_120 0.1175794076 - - hypothetical protein POPTR_0008s16470g [Populus trichocarpa]
6 Hb_189242_010 0.1179524195 - - hypothetical protein B456_013G0075002, partial [Gossypium raimondii]
7 Hb_048653_040 0.1216398344 - - ankyrin repeat family protein [Populus trichocarpa]
8 Hb_000210_150 0.1235595375 - - PREDICTED: protein YLS9-like [Jatropha curcas]
9 Hb_000039_100 0.1286497001 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
10 Hb_005588_010 0.1286911716 - - PREDICTED: patatin-like protein 2 [Jatropha curcas]
11 Hb_001411_150 0.1306197052 - - Dormancy/auxin associated family protein, putative [Theobroma cacao]
12 Hb_000172_300 0.1311155803 - - PREDICTED: L-ascorbate oxidase-like [Jatropha curcas]
13 Hb_002660_090 0.1335202093 - - hypothetical protein JCGZ_16500 [Jatropha curcas]
14 Hb_001437_200 0.1354155553 - - PREDICTED: UDP-glycosyltransferase 86A2 [Jatropha curcas]
15 Hb_004267_070 0.1355097333 - - latex allene oxide synthase [Hevea brasiliensis]
16 Hb_007433_020 0.1390961737 - - hypothetical protein VITISV_005320 [Vitis vinifera]
17 Hb_007383_050 0.1408381517 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF061 [Jatropha curcas]
18 Hb_027214_060 0.1415418242 - - PREDICTED: exocyst complex component EXO70A1-like [Jatropha curcas]
19 Hb_009189_010 0.1424422244 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 33 [Jatropha curcas]
20 Hb_004157_080 0.1436134306 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]

Gene co-expression network

sample Hb_055706_010 Hb_055706_010 Hb_005882_020 Hb_005882_020 Hb_055706_010--Hb_005882_020 Hb_089140_020 Hb_089140_020 Hb_055706_010--Hb_089140_020 Hb_035391_010 Hb_035391_010 Hb_055706_010--Hb_035391_010 Hb_000522_120 Hb_000522_120 Hb_055706_010--Hb_000522_120 Hb_189242_010 Hb_189242_010 Hb_055706_010--Hb_189242_010 Hb_048653_040 Hb_048653_040 Hb_055706_010--Hb_048653_040 Hb_000322_120 Hb_000322_120 Hb_005882_020--Hb_000322_120 Hb_005882_020--Hb_089140_020 Hb_000210_150 Hb_000210_150 Hb_005882_020--Hb_000210_150 Hb_002660_090 Hb_002660_090 Hb_005882_020--Hb_002660_090 Hb_000316_150 Hb_000316_150 Hb_005882_020--Hb_000316_150 Hb_089140_020--Hb_189242_010 Hb_001168_100 Hb_001168_100 Hb_089140_020--Hb_001168_100 Hb_007383_050 Hb_007383_050 Hb_089140_020--Hb_007383_050 Hb_004267_070 Hb_004267_070 Hb_089140_020--Hb_004267_070 Hb_001411_150 Hb_001411_150 Hb_089140_020--Hb_001411_150 Hb_003582_020 Hb_003582_020 Hb_035391_010--Hb_003582_020 Hb_035391_010--Hb_000210_150 Hb_025477_020 Hb_025477_020 Hb_035391_010--Hb_025477_020 Hb_136027_010 Hb_136027_010 Hb_035391_010--Hb_136027_010 Hb_002311_490 Hb_002311_490 Hb_035391_010--Hb_002311_490 Hb_141990_050 Hb_141990_050 Hb_000522_120--Hb_141990_050 Hb_031862_150 Hb_031862_150 Hb_000522_120--Hb_031862_150 Hb_007328_010 Hb_007328_010 Hb_000522_120--Hb_007328_010 Hb_005643_020 Hb_005643_020 Hb_000522_120--Hb_005643_020 Hb_005588_010 Hb_005588_010 Hb_000522_120--Hb_005588_010 Hb_022768_010 Hb_022768_010 Hb_000522_120--Hb_022768_010 Hb_117602_010 Hb_117602_010 Hb_189242_010--Hb_117602_010 Hb_004117_360 Hb_004117_360 Hb_189242_010--Hb_004117_360 Hb_002486_030 Hb_002486_030 Hb_189242_010--Hb_002486_030 Hb_073423_010 Hb_073423_010 Hb_189242_010--Hb_073423_010 Hb_008579_010 Hb_008579_010 Hb_189242_010--Hb_008579_010 Hb_000172_300 Hb_000172_300 Hb_048653_040--Hb_000172_300 Hb_000039_100 Hb_000039_100 Hb_048653_040--Hb_000039_100 Hb_011054_030 Hb_011054_030 Hb_048653_040--Hb_011054_030 Hb_001437_200 Hb_001437_200 Hb_048653_040--Hb_001437_200 Hb_116349_050 Hb_116349_050 Hb_048653_040--Hb_116349_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.101303 20.8899 2.29426 1.471 0.0415402 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0854235 0.0448148 0.0428761 1.14635 0.167383

CAGE analysis