Hb_055773_010

Information

Type -
Description -
Location Contig55773: 1-403
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_055773_010 0.0 - - -
2 Hb_011457_110 0.1409515511 - - PREDICTED: protein NETWORKED 1D [Jatropha curcas]
3 Hb_000614_080 0.1510339143 - - -
4 Hb_002843_050 0.1649795678 - - scab resistance family protein [Populus trichocarpa]
5 Hb_015401_020 0.1654889165 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_000076_290 0.1663502589 - - translation factor sui1, putative [Ricinus communis]
7 Hb_024399_010 0.1682376333 - - PREDICTED: uncharacterized protein LOC105649031 [Jatropha curcas]
8 Hb_001439_180 0.170879378 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
9 Hb_000152_890 0.171990271 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
10 Hb_000029_160 0.1722912167 - - Nitrilase, putative [Ricinus communis]
11 Hb_183510_010 0.172829336 - - PREDICTED: RPM1-interacting protein 4-like isoform X2 [Jatropha curcas]
12 Hb_001034_020 0.1730734872 - - PREDICTED: uncharacterized protein LOC105641929 [Jatropha curcas]
13 Hb_002804_050 0.1733559176 - - PREDICTED: uncharacterized protein LOC105628258 [Jatropha curcas]
14 Hb_004931_040 0.1738500307 - - splicing factor-related family protein [Populus trichocarpa]
15 Hb_060437_010 0.174279311 - - E3 ubiquitin protein ligase RIE1 [Morus notabilis]
16 Hb_000367_290 0.1752787882 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
17 Hb_005038_020 0.176461549 - - WD-repeat protein, putative [Ricinus communis]
18 Hb_029281_010 0.1804116071 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
19 Hb_005725_070 0.1837535639 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000926_270 0.1845808822 - - PREDICTED: uncharacterized protein LOC105633003 [Jatropha curcas]

Gene co-expression network

sample Hb_055773_010 Hb_055773_010 Hb_011457_110 Hb_011457_110 Hb_055773_010--Hb_011457_110 Hb_000614_080 Hb_000614_080 Hb_055773_010--Hb_000614_080 Hb_002843_050 Hb_002843_050 Hb_055773_010--Hb_002843_050 Hb_015401_020 Hb_015401_020 Hb_055773_010--Hb_015401_020 Hb_000076_290 Hb_000076_290 Hb_055773_010--Hb_000076_290 Hb_024399_010 Hb_024399_010 Hb_055773_010--Hb_024399_010 Hb_000152_890 Hb_000152_890 Hb_011457_110--Hb_000152_890 Hb_000367_290 Hb_000367_290 Hb_011457_110--Hb_000367_290 Hb_017168_010 Hb_017168_010 Hb_011457_110--Hb_017168_010 Hb_011457_110--Hb_024399_010 Hb_000161_030 Hb_000161_030 Hb_011457_110--Hb_000161_030 Hb_005314_010 Hb_005314_010 Hb_011457_110--Hb_005314_010 Hb_027405_020 Hb_027405_020 Hb_000614_080--Hb_027405_020 Hb_000152_560 Hb_000152_560 Hb_000614_080--Hb_000152_560 Hb_000029_160 Hb_000029_160 Hb_000614_080--Hb_000029_160 Hb_003125_060 Hb_003125_060 Hb_000614_080--Hb_003125_060 Hb_000614_080--Hb_000152_890 Hb_002813_010 Hb_002813_010 Hb_000614_080--Hb_002813_010 Hb_002804_050 Hb_002804_050 Hb_002843_050--Hb_002804_050 Hb_105085_010 Hb_105085_010 Hb_002843_050--Hb_105085_010 Hb_000735_120 Hb_000735_120 Hb_002843_050--Hb_000735_120 Hb_005122_060 Hb_005122_060 Hb_002843_050--Hb_005122_060 Hb_001259_030 Hb_001259_030 Hb_002843_050--Hb_001259_030 Hb_015401_020--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_015401_020--Hb_000174_200 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_001439_180 Hb_001439_180 Hb_015401_020--Hb_001439_180 Hb_015401_020--Hb_005314_010 Hb_002270_010 Hb_002270_010 Hb_015401_020--Hb_002270_010 Hb_000076_290--Hb_000174_200 Hb_004032_350 Hb_004032_350 Hb_000076_290--Hb_004032_350 Hb_000640_210 Hb_000640_210 Hb_000076_290--Hb_000640_210 Hb_000076_290--Hb_001439_180 Hb_000076_290--Hb_002270_010 Hb_024399_010--Hb_005314_010 Hb_005725_070 Hb_005725_070 Hb_024399_010--Hb_005725_070 Hb_000481_010 Hb_000481_010 Hb_024399_010--Hb_000481_010 Hb_011930_010 Hb_011930_010 Hb_024399_010--Hb_011930_010 Hb_002818_040 Hb_002818_040 Hb_024399_010--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_024399_010--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.10813 2.4845 0 0.453835 4.7263 2.37101
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.742341 1.16939 2.08226 1.08505 0.452271

CAGE analysis