Hb_056012_010

Information

Type -
Description -
Location Contig56012: 3977-7344
Sequence    

Annotation

kegg
ID pxb:103960342
description TMV resistance protein N-like
nr
ID XP_009371072.1
description PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
swissprot
ID Q9RBS2
description Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2
trembl
ID A0A059CNT8
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01355 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056012_010 0.0 - - PREDICTED: TMV resistance protein N-like [Pyrus x bretschneideri]
2 Hb_000803_060 0.1109996873 - - poly(p)/ATP NAD kinase, putative [Ricinus communis]
3 Hb_102100_010 0.1148852971 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
4 Hb_000220_090 0.1150645739 - - PREDICTED: E3 ubiquitin-protein ligase RHA2A-like [Jatropha curcas]
5 Hb_001258_150 0.1222735209 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
6 Hb_185513_010 0.1237730423 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001662_170 0.1335219027 - - PREDICTED: phospholipase D delta-like [Jatropha curcas]
8 Hb_001489_120 0.1382651357 - - PREDICTED: alpha-amylase 3, chloroplastic [Jatropha curcas]
9 Hb_033642_070 0.1391114535 - - PREDICTED: oligopeptide transporter 7-like [Jatropha curcas]
10 Hb_162074_010 0.1399810449 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_012787_040 0.1400801837 - - PREDICTED: uncharacterized protein LOC105649794 isoform X2 [Jatropha curcas]
12 Hb_000015_180 0.1410480197 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
13 Hb_012725_040 0.1415894482 - - receptor serine-threonine protein kinase, putative [Ricinus communis]
14 Hb_009040_010 0.141623755 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
15 Hb_033149_020 0.1442218308 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
16 Hb_011360_090 0.1442453876 - - PREDICTED: uncharacterized protein LOC105644141 [Jatropha curcas]
17 Hb_000960_010 0.1487153372 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
18 Hb_006414_020 0.149136239 transcription factor TF Family: MYB -
19 Hb_003637_020 0.1499176244 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004032_310 0.1532842798 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 14 [Jatropha curcas]

Gene co-expression network

sample Hb_056012_010 Hb_056012_010 Hb_000803_060 Hb_000803_060 Hb_056012_010--Hb_000803_060 Hb_102100_010 Hb_102100_010 Hb_056012_010--Hb_102100_010 Hb_000220_090 Hb_000220_090 Hb_056012_010--Hb_000220_090 Hb_001258_150 Hb_001258_150 Hb_056012_010--Hb_001258_150 Hb_185513_010 Hb_185513_010 Hb_056012_010--Hb_185513_010 Hb_001662_170 Hb_001662_170 Hb_056012_010--Hb_001662_170 Hb_012787_040 Hb_012787_040 Hb_000803_060--Hb_012787_040 Hb_006414_020 Hb_006414_020 Hb_000803_060--Hb_006414_020 Hb_000803_060--Hb_001258_150 Hb_001489_120 Hb_001489_120 Hb_000803_060--Hb_001489_120 Hb_003752_120 Hb_003752_120 Hb_000803_060--Hb_003752_120 Hb_004032_310 Hb_004032_310 Hb_000803_060--Hb_004032_310 Hb_000015_180 Hb_000015_180 Hb_102100_010--Hb_000015_180 Hb_007951_120 Hb_007951_120 Hb_102100_010--Hb_007951_120 Hb_102100_010--Hb_000220_090 Hb_016404_010 Hb_016404_010 Hb_102100_010--Hb_016404_010 Hb_138575_010 Hb_138575_010 Hb_102100_010--Hb_138575_010 Hb_000220_090--Hb_000015_180 Hb_003038_010 Hb_003038_010 Hb_000220_090--Hb_003038_010 Hb_000220_090--Hb_000803_060 Hb_000434_050 Hb_000434_050 Hb_000220_090--Hb_000434_050 Hb_001258_150--Hb_001489_120 Hb_001258_150--Hb_004032_310 Hb_012725_040 Hb_012725_040 Hb_001258_150--Hb_012725_040 Hb_000071_140 Hb_000071_140 Hb_001258_150--Hb_000071_140 Hb_011360_090 Hb_011360_090 Hb_001258_150--Hb_011360_090 Hb_185513_010--Hb_012725_040 Hb_003637_020 Hb_003637_020 Hb_185513_010--Hb_003637_020 Hb_103788_010 Hb_103788_010 Hb_185513_010--Hb_103788_010 Hb_000117_060 Hb_000117_060 Hb_185513_010--Hb_000117_060 Hb_001865_060 Hb_001865_060 Hb_185513_010--Hb_001865_060 Hb_004106_010 Hb_004106_010 Hb_001662_170--Hb_004106_010 Hb_001662_170--Hb_012787_040 Hb_001662_170--Hb_004032_310 Hb_001053_200 Hb_001053_200 Hb_001662_170--Hb_001053_200 Hb_001662_170--Hb_003752_120 Hb_001662_170--Hb_011360_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.69094 5.22115 0.997505 1.08881 0.406036 0.383904
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.113739 0.167821 0.107043 0.51469 0.286548

CAGE analysis