Hb_056101_010

Information

Type -
Description -
Location Contig56101: 19-2666
Sequence    

Annotation

kegg
ID pop:POPTR_0391s00200g
description hypothetical protein
nr
ID XP_006388028.1
description hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID A9PEA1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0391s00200g PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48793: 1-448 , PASA_asmbl_48794: 2051-2664
cDNA
(Sanger)
(ID:Location)		 005_N01.ab1: 2077-2664 , 024_E03.ab1: 4-491 , 044_I04.ab1: 2051-2664

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056101_010 0.0 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
2 Hb_025526_010 0.0841903665 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
3 Hb_000575_110 0.0932178734 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
4 Hb_004881_060 0.1030232436 transcription factor TF Family: WRKY hypothetical protein POPTR_0005s22480g [Populus trichocarpa]
5 Hb_000422_020 0.103789235 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_005116_010 0.1120117712 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
7 Hb_009486_100 0.1173272046 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
8 Hb_008768_010 0.1326829972 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
9 Hb_003090_180 0.1338993048 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
10 Hb_006788_150 0.1343889427 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003060_080 0.1357434062 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
12 Hb_000661_230 0.136824378 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X2 [Jatropha curcas]
13 Hb_001104_210 0.1377202478 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
14 Hb_014037_010 0.1379901605 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
15 Hb_007894_260 0.138800056 - - receptor protein kinase, putative [Ricinus communis]
16 Hb_003900_050 0.1388889331 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
17 Hb_010334_040 0.1390166189 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
18 Hb_001136_030 0.1407432908 - - PREDICTED: mediator of RNA polymerase II transcription subunit 25-like [Jatropha curcas]
19 Hb_006970_100 0.142160688 - - UDP-glucosyltransferase, putative [Ricinus communis]
20 Hb_001218_070 0.1437856883 - - PREDICTED: sugar transport protein 5-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_056101_010 Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_056101_010--Hb_025526_010 Hb_000575_110 Hb_000575_110 Hb_056101_010--Hb_000575_110 Hb_004881_060 Hb_004881_060 Hb_056101_010--Hb_004881_060 Hb_000422_020 Hb_000422_020 Hb_056101_010--Hb_000422_020 Hb_005116_010 Hb_005116_010 Hb_056101_010--Hb_005116_010 Hb_009486_100 Hb_009486_100 Hb_056101_010--Hb_009486_100 Hb_006788_150 Hb_006788_150 Hb_025526_010--Hb_006788_150 Hb_000661_230 Hb_000661_230 Hb_025526_010--Hb_000661_230 Hb_025526_010--Hb_000422_020 Hb_025526_010--Hb_004881_060 Hb_003060_080 Hb_003060_080 Hb_025526_010--Hb_003060_080 Hb_000575_110--Hb_000422_020 Hb_000575_110--Hb_009486_100 Hb_000575_110--Hb_025526_010 Hb_002048_010 Hb_002048_010 Hb_000575_110--Hb_002048_010 Hb_003900_050 Hb_003900_050 Hb_000575_110--Hb_003900_050 Hb_003090_180 Hb_003090_180 Hb_004881_060--Hb_003090_180 Hb_001104_210 Hb_001104_210 Hb_004881_060--Hb_001104_210 Hb_004881_060--Hb_003900_050 Hb_000205_210 Hb_000205_210 Hb_004881_060--Hb_000205_210 Hb_001105_200 Hb_001105_200 Hb_004881_060--Hb_001105_200 Hb_000683_010 Hb_000683_010 Hb_000422_020--Hb_000683_010 Hb_008768_010 Hb_008768_010 Hb_000422_020--Hb_008768_010 Hb_000422_020--Hb_003900_050 Hb_010334_040 Hb_010334_040 Hb_005116_010--Hb_010334_040 Hb_005010_040 Hb_005010_040 Hb_005116_010--Hb_005010_040 Hb_009627_040 Hb_009627_040 Hb_005116_010--Hb_009627_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_009486_100--Hb_005116_010 Hb_002928_220 Hb_002928_220 Hb_009486_100--Hb_002928_220 Hb_009486_100--Hb_009812_010 Hb_001454_300 Hb_001454_300 Hb_009486_100--Hb_001454_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 34.1177 14.9289 23.5443 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.26588 0.601683 0.298204 192.97 40.7217

CAGE analysis