Hb_056196_020

Information

Type -
Description -
Location Contig56196: 5243-7554
Sequence    

Annotation

kegg
ID vvi:104880231
description uncharacterized LOC104880231
nr
ID XP_012069069.1
description PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXC3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24850 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48846: 5052-7608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056196_020 0.0 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
2 Hb_004097_030 0.0604016025 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
3 Hb_005914_100 0.071816458 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002837_120 0.0726667517 - - PREDICTED: legumin A-like [Jatropha curcas]
5 Hb_004174_030 0.0793803318 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase IMK2 [Populus euphratica]
6 Hb_001969_030 0.0795598751 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003018_210 0.0884424737 - - PREDICTED: uncharacterized protein LOC105138721 isoform X2 [Populus euphratica]
8 Hb_000394_120 0.0918688812 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
9 Hb_006573_310 0.0922721255 - - Tellurite resistance protein tehA, putative [Ricinus communis]
10 Hb_000162_160 0.0936335188 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
11 Hb_006452_210 0.0948732015 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
12 Hb_003641_040 0.0956694047 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
13 Hb_001123_180 0.0979629694 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000853_020 0.0986648305 - - PREDICTED: endoglucanase 17 [Populus euphratica]
15 Hb_000347_310 0.1003442673 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 3-like [Jatropha curcas]
16 Hb_009838_170 0.1018534849 - - Arylacetamide deacetylase, putative [Ricinus communis]
17 Hb_002928_150 0.1031545888 - - PREDICTED: cyclin-B2-4-like [Jatropha curcas]
18 Hb_007245_030 0.1051444025 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004241_160 0.105936099 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
20 Hb_004774_080 0.1074135269 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_056196_020 Hb_056196_020 Hb_004097_030 Hb_004097_030 Hb_056196_020--Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_056196_020--Hb_005914_100 Hb_002837_120 Hb_002837_120 Hb_056196_020--Hb_002837_120 Hb_004174_030 Hb_004174_030 Hb_056196_020--Hb_004174_030 Hb_001969_030 Hb_001969_030 Hb_056196_020--Hb_001969_030 Hb_003018_210 Hb_003018_210 Hb_056196_020--Hb_003018_210 Hb_004097_030--Hb_005914_100 Hb_004097_030--Hb_004174_030 Hb_002928_150 Hb_002928_150 Hb_004097_030--Hb_002928_150 Hb_003398_050 Hb_003398_050 Hb_004097_030--Hb_003398_050 Hb_004097_030--Hb_003018_210 Hb_005914_100--Hb_002928_150 Hb_005914_100--Hb_004174_030 Hb_007245_030 Hb_007245_030 Hb_005914_100--Hb_007245_030 Hb_005914_100--Hb_003398_050 Hb_002837_120--Hb_001969_030 Hb_000853_020 Hb_000853_020 Hb_002837_120--Hb_000853_020 Hb_169136_010 Hb_169136_010 Hb_002837_120--Hb_169136_010 Hb_002837_120--Hb_004174_030 Hb_002837_120--Hb_004097_030 Hb_004174_030--Hb_003018_210 Hb_001220_020 Hb_001220_020 Hb_004174_030--Hb_001220_020 Hb_004174_030--Hb_003398_050 Hb_004174_030--Hb_002928_150 Hb_001969_030--Hb_000853_020 Hb_000175_160 Hb_000175_160 Hb_001969_030--Hb_000175_160 Hb_022092_100 Hb_022092_100 Hb_001969_030--Hb_022092_100 Hb_003641_040 Hb_003641_040 Hb_001969_030--Hb_003641_040 Hb_000035_190 Hb_000035_190 Hb_003018_210--Hb_000035_190 Hb_001699_070 Hb_001699_070 Hb_003018_210--Hb_001699_070 Hb_003018_210--Hb_003398_050 Hb_003018_210--Hb_001220_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0305831 0.168474 22.6227 9.76511 0 0.0098323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.28296 0.346542

CAGE analysis