Hb_056196_050

Information

Type -
Description -
Location Contig56196: 25583-31411
Sequence    

Annotation

kegg
ID rcu:RCOM_1488570
description nucleic acid binding protein, putative (EC:2.7.7.19)
nr
ID XP_012069073.1
description PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
swissprot
ID Q8VYW1
description Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana GN=PAPS4 PE=1 SV=1
trembl
ID A0A067L0V2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24852 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48847: 25554-31117 , PASA_asmbl_48848: 27574-28039 , PASA_asmbl_48849: 30417-30686 , PASA_asmbl_48850: 28056-28410
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056196_050 0.0 - - PREDICTED: nuclear poly(A) polymerase 4-like [Jatropha curcas]
2 Hb_000160_290 0.070549961 - - unnamed protein product [Vitis vinifera]
3 Hb_000813_100 0.0778734125 - - PREDICTED: uncharacterized protein LOC105631583 isoform X2 [Jatropha curcas]
4 Hb_003124_130 0.078734728 - - PREDICTED: KH domain-containing protein At4g18375 isoform X1 [Jatropha curcas]
5 Hb_000997_030 0.078844339 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
6 Hb_010180_040 0.0827505212 - - PREDICTED: prosaposin isoform X1 [Jatropha curcas]
7 Hb_005494_020 0.0845788944 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
8 Hb_000046_450 0.087226261 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
9 Hb_000922_370 0.0877880532 - - PREDICTED: uncharacterized protein LOC105640366 [Jatropha curcas]
10 Hb_000743_040 0.0878170934 - - ribosomal RNA methyltransferase, putative [Ricinus communis]
11 Hb_002042_140 0.0893069206 - - PREDICTED: uncharacterized protein LOC105647570 [Jatropha curcas]
12 Hb_000600_070 0.0893785418 - - PREDICTED: leucine aminopeptidase 1-like [Jatropha curcas]
13 Hb_000160_220 0.090043968 - - PREDICTED: protein AAR2 homolog isoform X1 [Jatropha curcas]
14 Hb_000347_130 0.0901293234 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]
15 Hb_000475_020 0.090351349 - - PREDICTED: dehydrogenase/reductase SDR family member on chromosome X homolog isoform X2 [Jatropha curcas]
16 Hb_003044_020 0.0906804263 - - PREDICTED: uncharacterized protein LOC105641479 [Jatropha curcas]
17 Hb_010695_020 0.0912774195 - - PREDICTED: superkiller viralicidic activity 2-like 2 [Jatropha curcas]
18 Hb_003428_070 0.0915429423 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
19 Hb_003935_030 0.091725922 - - PREDICTED: 14-3-3-like protein GF14 kappa isoform X2 [Jatropha curcas]
20 Hb_001417_050 0.0920783096 - - PREDICTED: G patch domain-containing protein TGH [Jatropha curcas]

Gene co-expression network

sample Hb_056196_050 Hb_056196_050 Hb_000160_290 Hb_000160_290 Hb_056196_050--Hb_000160_290 Hb_000813_100 Hb_000813_100 Hb_056196_050--Hb_000813_100 Hb_003124_130 Hb_003124_130 Hb_056196_050--Hb_003124_130 Hb_000997_030 Hb_000997_030 Hb_056196_050--Hb_000997_030 Hb_010180_040 Hb_010180_040 Hb_056196_050--Hb_010180_040 Hb_005494_020 Hb_005494_020 Hb_056196_050--Hb_005494_020 Hb_002174_020 Hb_002174_020 Hb_000160_290--Hb_002174_020 Hb_000922_370 Hb_000922_370 Hb_000160_290--Hb_000922_370 Hb_001417_050 Hb_001417_050 Hb_000160_290--Hb_001417_050 Hb_002235_160 Hb_002235_160 Hb_000160_290--Hb_002235_160 Hb_003044_020 Hb_003044_020 Hb_000160_290--Hb_003044_020 Hb_001493_040 Hb_001493_040 Hb_000160_290--Hb_001493_040 Hb_000594_020 Hb_000594_020 Hb_000813_100--Hb_000594_020 Hb_000813_100--Hb_000997_030 Hb_004899_070 Hb_004899_070 Hb_000813_100--Hb_004899_070 Hb_147737_010 Hb_147737_010 Hb_000813_100--Hb_147737_010 Hb_000002_440 Hb_000002_440 Hb_000813_100--Hb_000002_440 Hb_001946_300 Hb_001946_300 Hb_000813_100--Hb_001946_300 Hb_000567_010 Hb_000567_010 Hb_003124_130--Hb_000567_010 Hb_000796_190 Hb_000796_190 Hb_003124_130--Hb_000796_190 Hb_003124_130--Hb_147737_010 Hb_001454_320 Hb_001454_320 Hb_003124_130--Hb_001454_320 Hb_000158_130 Hb_000158_130 Hb_003124_130--Hb_000158_130 Hb_003124_130--Hb_000160_290 Hb_000264_100 Hb_000264_100 Hb_000997_030--Hb_000264_100 Hb_030565_090 Hb_030565_090 Hb_000997_030--Hb_030565_090 Hb_000107_040 Hb_000107_040 Hb_000997_030--Hb_000107_040 Hb_000023_060 Hb_000023_060 Hb_000997_030--Hb_000023_060 Hb_034243_020 Hb_034243_020 Hb_000997_030--Hb_034243_020 Hb_008714_020 Hb_008714_020 Hb_010180_040--Hb_008714_020 Hb_010180_040--Hb_005494_020 Hb_015763_030 Hb_015763_030 Hb_010180_040--Hb_015763_030 Hb_000347_130 Hb_000347_130 Hb_010180_040--Hb_000347_130 Hb_000046_450 Hb_000046_450 Hb_010180_040--Hb_000046_450 Hb_000160_220 Hb_000160_220 Hb_010180_040--Hb_000160_220 Hb_005494_020--Hb_000567_010 Hb_029142_010 Hb_029142_010 Hb_005494_020--Hb_029142_010 Hb_003935_030 Hb_003935_030 Hb_005494_020--Hb_003935_030 Hb_002960_160 Hb_002960_160 Hb_005494_020--Hb_002960_160 Hb_003428_070 Hb_003428_070 Hb_005494_020--Hb_003428_070 Hb_005494_020--Hb_000347_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
56.6093 71.3297 19.5433 35.14 66.6099 102.335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.4688 17.4218 31.6307 32.4503 30.3283

CAGE analysis