Hb_056199_010

Information

Type -
Description -
Location Contig56199: 3318-5944
Sequence    

Annotation

kegg
ID rcu:RCOM_0884250
description DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative
nr
ID XP_011030577.1
description PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9S9D8
description DNA-directed RNA polymerase II 19 kD polypeptide rpb7, putative OS=Ricinus communis GN=RCOM_0884250 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48859: 3815-3929 , PASA_asmbl_48861: 5204-5864
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056199_010 0.0 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
2 Hb_000001_040 0.1338222874 - - unnamed protein product [Coffea canephora]
3 Hb_005054_070 0.1441187191 - - unnamed protein product [Vitis vinifera]
4 Hb_000176_120 0.1564104284 - - seryl-tRNA synthetase, putative [Ricinus communis]
5 Hb_007012_020 0.1585224079 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
6 Hb_136731_010 0.1592319418 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
7 Hb_005367_010 0.1602650616 - - -
8 Hb_007188_020 0.1613805825 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
9 Hb_106005_010 0.1657088324 - - EG5651 [Manihot esculenta]
10 Hb_006846_140 0.1677740874 - - conserved hypothetical protein [Ricinus communis]
11 Hb_032927_010 0.1688248736 - - -
12 Hb_152554_010 0.1714629757 - - hypothetical protein B456_008G095800, partial [Gossypium raimondii]
13 Hb_006502_080 0.1715678782 - - -
14 Hb_000656_100 0.1763453089 - - PREDICTED: uncharacterized protein LOC105633651 [Jatropha curcas]
15 Hb_000265_130 0.1795122252 - - -
16 Hb_009543_030 0.1824388556 - - prefoldin subunit 1 [Jatropha curcas]
17 Hb_005085_030 0.1830718099 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
18 Hb_000812_040 0.1840564758 - - zinc finger family protein [Populus trichocarpa]
19 Hb_000261_360 0.1847620038 - - unknown [Lotus japonicus]
20 Hb_004117_180 0.1853639463 - - -

Gene co-expression network

sample Hb_056199_010 Hb_056199_010 Hb_000001_040 Hb_000001_040 Hb_056199_010--Hb_000001_040 Hb_005054_070 Hb_005054_070 Hb_056199_010--Hb_005054_070 Hb_000176_120 Hb_000176_120 Hb_056199_010--Hb_000176_120 Hb_007012_020 Hb_007012_020 Hb_056199_010--Hb_007012_020 Hb_136731_010 Hb_136731_010 Hb_056199_010--Hb_136731_010 Hb_005367_010 Hb_005367_010 Hb_056199_010--Hb_005367_010 Hb_000265_130 Hb_000265_130 Hb_000001_040--Hb_000265_130 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_007188_020 Hb_007188_020 Hb_000001_040--Hb_007188_020 Hb_000001_040--Hb_000176_120 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_003581_010 Hb_003581_010 Hb_000001_040--Hb_003581_010 Hb_005054_070--Hb_000176_120 Hb_005054_070--Hb_136731_010 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_005054_070--Hb_000001_040 Hb_004241_040 Hb_004241_040 Hb_005054_070--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_000176_120--Hb_136731_010 Hb_000380_010 Hb_000380_010 Hb_007012_020--Hb_000380_010 Hb_006502_080 Hb_006502_080 Hb_007012_020--Hb_006502_080 Hb_009543_030 Hb_009543_030 Hb_007012_020--Hb_009543_030 Hb_005656_050 Hb_005656_050 Hb_007012_020--Hb_005656_050 Hb_067776_010 Hb_067776_010 Hb_007012_020--Hb_067776_010 Hb_000684_230 Hb_000684_230 Hb_007012_020--Hb_000684_230 Hb_001377_180 Hb_001377_180 Hb_136731_010--Hb_001377_180 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_000812_040 Hb_000812_040 Hb_136731_010--Hb_000812_040 Hb_136731_010--Hb_006502_080 Hb_136731_010--Hb_005367_010 Hb_005367_010--Hb_001377_180 Hb_005367_010--Hb_152554_010 Hb_007441_270 Hb_007441_270 Hb_005367_010--Hb_007441_270 Hb_003861_040 Hb_003861_040 Hb_005367_010--Hb_003861_040 Hb_005367_010--Hb_000176_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.19206 0 1.58412 6.11447 5.2837 24.1291
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80563 9.27659 2.72189 3.84687 0.726226

CAGE analysis