Hb_056506_010

Information

Type -
Description -
Location Contig56506: 300-1232
Sequence    

Annotation

kegg
ID pop:POPTR_0001s08730g
description POPTRDRAFT_751384; hypothetical protein
nr
ID XP_002299564.2
description hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9GKP2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s08730g PE=4 SV=2
Gene Ontology
ID GO:0043167
description zinc finger protein gis2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056506_010 0.0 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
2 Hb_001008_020 0.0577223476 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_007137_020 0.1006798005 - - multicopper oxidase, putative [Ricinus communis]
4 Hb_009898_060 0.1200727109 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
5 Hb_003649_030 0.128040324 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
6 Hb_000061_110 0.1603570444 - - -
7 Hb_000044_050 0.1615888245 - - PREDICTED: amino acid permease 6-like isoform X1 [Jatropha curcas]
8 Hb_000866_390 0.1643698806 - - PREDICTED: O-glucosyltransferase rumi homolog [Jatropha curcas]
9 Hb_008195_020 0.1661119097 - - Vacuolar-processing enzyme precursor [Ricinus communis]
10 Hb_000417_150 0.1793727391 - - hypothetical protein JCGZ_21586 [Jatropha curcas]
11 Hb_002973_130 0.1812048358 - - PREDICTED: uncharacterized protein LOC104609908 [Nelumbo nucifera]
12 Hb_085010_010 0.1889121705 - - PREDICTED: MLO-like protein 3 isoform X2 [Vitis vinifera]
13 Hb_000286_180 0.1896361996 - - PREDICTED: dnaJ homolog subfamily B member 4 [Jatropha curcas]
14 Hb_026053_030 0.1934098409 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
15 Hb_003176_020 0.2027614563 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
16 Hb_001989_080 0.2040819815 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_000392_510 0.2060706976 - - PREDICTED: mitochondrial outer membrane protein porin of 36 kDa-like [Jatropha curcas]
18 Hb_067345_020 0.2114146726 - - PREDICTED: uncharacterized protein LOC105632434 [Jatropha curcas]
19 Hb_172426_010 0.2127599909 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
20 Hb_004767_060 0.2141438513 - - PREDICTED: uncharacterized protein LOC105761928 [Gossypium raimondii]

Gene co-expression network

sample Hb_056506_010 Hb_056506_010 Hb_001008_020 Hb_001008_020 Hb_056506_010--Hb_001008_020 Hb_007137_020 Hb_007137_020 Hb_056506_010--Hb_007137_020 Hb_009898_060 Hb_009898_060 Hb_056506_010--Hb_009898_060 Hb_003649_030 Hb_003649_030 Hb_056506_010--Hb_003649_030 Hb_000061_110 Hb_000061_110 Hb_056506_010--Hb_000061_110 Hb_000044_050 Hb_000044_050 Hb_056506_010--Hb_000044_050 Hb_001008_020--Hb_007137_020 Hb_085010_010 Hb_085010_010 Hb_001008_020--Hb_085010_010 Hb_000866_390 Hb_000866_390 Hb_001008_020--Hb_000866_390 Hb_001008_020--Hb_003649_030 Hb_001008_020--Hb_000044_050 Hb_001989_080 Hb_001989_080 Hb_007137_020--Hb_001989_080 Hb_000286_180 Hb_000286_180 Hb_007137_020--Hb_000286_180 Hb_000392_510 Hb_000392_510 Hb_007137_020--Hb_000392_510 Hb_007137_020--Hb_009898_060 Hb_009898_060--Hb_000061_110 Hb_009898_060--Hb_003649_030 Hb_001899_040 Hb_001899_040 Hb_009898_060--Hb_001899_040 Hb_002056_140 Hb_002056_140 Hb_009898_060--Hb_002056_140 Hb_000269_040 Hb_000269_040 Hb_009898_060--Hb_000269_040 Hb_003649_030--Hb_000061_110 Hb_003649_030--Hb_000866_390 Hb_001411_100 Hb_001411_100 Hb_003649_030--Hb_001411_100 Hb_002815_040 Hb_002815_040 Hb_000061_110--Hb_002815_040 Hb_000061_110--Hb_001411_100 Hb_001355_060 Hb_001355_060 Hb_000061_110--Hb_001355_060 Hb_026053_030 Hb_026053_030 Hb_000044_050--Hb_026053_030 Hb_008195_020 Hb_008195_020 Hb_000044_050--Hb_008195_020 Hb_000044_050--Hb_001989_080 Hb_004007_230 Hb_004007_230 Hb_000044_050--Hb_004007_230 Hb_000417_150 Hb_000417_150 Hb_000044_050--Hb_000417_150 Hb_004143_140 Hb_004143_140 Hb_000044_050--Hb_004143_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.263986 0 0.0718142 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0627288 0.207943

CAGE analysis