Hb_056506_020

Information

Type -
Description -
Location Contig56506: 3209-3622
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04050g
description hypothetical protein
nr
ID XP_012089118.1
description PREDICTED: uncharacterized protein LOC105647588 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JHY1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23389 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056506_020 0.0 - - PREDICTED: uncharacterized protein LOC105647588 [Jatropha curcas]
2 Hb_003581_250 0.1684156276 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
3 Hb_005723_020 0.1685081558 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011920_020 0.1701764506 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
5 Hb_008165_030 0.171596027 - - PREDICTED: uncharacterized protein LOC105641288 [Jatropha curcas]
6 Hb_001674_040 0.173250382 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 23 [Jatropha curcas]
7 Hb_000256_020 0.1736302835 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
8 Hb_003388_100 0.1742572046 - - 16S rRNA processing protein RimM [Psychrobacter phenylpyruvicus]
9 Hb_004724_370 0.1762064995 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
10 Hb_143960_010 0.1783577691 - - -
11 Hb_184798_080 0.1787077904 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-related [Jatropha curcas]
12 Hb_004204_130 0.1789042893 - - PREDICTED: uncharacterized protein LOC103930912 [Pyrus x bretschneideri]
13 Hb_001221_140 0.1792279449 - - DNA binding protein, putative [Ricinus communis]
14 Hb_002701_150 0.1802694719 - - PREDICTED: probable tRNA (guanine(26)-N(2))-dimethyltransferase 2 isoform X2 [Jatropha curcas]
15 Hb_031641_010 0.1808324257 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000497_010 0.1817981501 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR2 [Jatropha curcas]
17 Hb_004040_040 0.1824123018 desease resistance Gene Name: ABC_tran hypothetical protein POPTR_0006s07370g [Populus trichocarpa]
18 Hb_000958_150 0.1831600656 - - Actin, putative [Ricinus communis]
19 Hb_004631_190 0.1848460238 - - PREDICTED: protein SCAI homolog [Jatropha curcas]
20 Hb_000264_080 0.1851808564 - - hypothetical protein JCGZ_21412 [Jatropha curcas]

Gene co-expression network

sample Hb_056506_020 Hb_056506_020 Hb_003581_250 Hb_003581_250 Hb_056506_020--Hb_003581_250 Hb_005723_020 Hb_005723_020 Hb_056506_020--Hb_005723_020 Hb_011920_020 Hb_011920_020 Hb_056506_020--Hb_011920_020 Hb_008165_030 Hb_008165_030 Hb_056506_020--Hb_008165_030 Hb_001674_040 Hb_001674_040 Hb_056506_020--Hb_001674_040 Hb_000256_020 Hb_000256_020 Hb_056506_020--Hb_000256_020 Hb_004884_150 Hb_004884_150 Hb_003581_250--Hb_004884_150 Hb_000174_060 Hb_000174_060 Hb_003581_250--Hb_000174_060 Hb_002701_150 Hb_002701_150 Hb_003581_250--Hb_002701_150 Hb_002876_130 Hb_002876_130 Hb_003581_250--Hb_002876_130 Hb_140049_040 Hb_140049_040 Hb_003581_250--Hb_140049_040 Hb_007426_060 Hb_007426_060 Hb_003581_250--Hb_007426_060 Hb_002686_040 Hb_002686_040 Hb_005723_020--Hb_002686_040 Hb_103747_020 Hb_103747_020 Hb_005723_020--Hb_103747_020 Hb_008226_090 Hb_008226_090 Hb_005723_020--Hb_008226_090 Hb_001135_120 Hb_001135_120 Hb_005723_020--Hb_001135_120 Hb_027654_020 Hb_027654_020 Hb_005723_020--Hb_027654_020 Hb_000933_010 Hb_000933_010 Hb_005723_020--Hb_000933_010 Hb_155159_010 Hb_155159_010 Hb_011920_020--Hb_155159_010 Hb_011920_020--Hb_001674_040 Hb_001221_090 Hb_001221_090 Hb_011920_020--Hb_001221_090 Hb_010661_020 Hb_010661_020 Hb_011920_020--Hb_010661_020 Hb_096819_010 Hb_096819_010 Hb_011920_020--Hb_096819_010 Hb_002092_070 Hb_002092_070 Hb_011920_020--Hb_002092_070 Hb_002903_140 Hb_002903_140 Hb_008165_030--Hb_002903_140 Hb_030545_030 Hb_030545_030 Hb_008165_030--Hb_030545_030 Hb_008165_030--Hb_001674_040 Hb_010287_030 Hb_010287_030 Hb_008165_030--Hb_010287_030 Hb_008165_030--Hb_096819_010 Hb_004032_230 Hb_004032_230 Hb_008165_030--Hb_004032_230 Hb_004724_370 Hb_004724_370 Hb_001674_040--Hb_004724_370 Hb_001723_140 Hb_001723_140 Hb_001674_040--Hb_001723_140 Hb_001584_350 Hb_001584_350 Hb_001674_040--Hb_001584_350 Hb_001674_040--Hb_010661_020 Hb_000256_020--Hb_001723_140 Hb_088144_020 Hb_088144_020 Hb_000256_020--Hb_088144_020 Hb_004064_050 Hb_004064_050 Hb_000256_020--Hb_004064_050 Hb_000184_150 Hb_000184_150 Hb_000256_020--Hb_000184_150 Hb_002045_250 Hb_002045_250 Hb_000256_020--Hb_002045_250 Hb_001171_030 Hb_001171_030 Hb_000256_020--Hb_001171_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.552427 0.693446 0.68876 0.409946 0.393759 0.776469
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.293294 0.237155 0.561978 0.260669

CAGE analysis