Hb_056550_010

Information

Type -
Description -
Location Contig56550: 2736-3191
Sequence    

Annotation

kegg
ID sly:104645698
description DNA-binding protein HEXBP-like
nr
ID XP_009620835.1
description PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID A0A061E4Q3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009053 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105631113

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056550_010 0.0 - - PREDICTED: uncharacterized protein LOC104112577 [Nicotiana tomentosiformis]
2 Hb_000351_150 0.0123227552 - - Wall-associated kinase 2, putative [Theobroma cacao]
3 Hb_087426_010 0.0935500063 - - PREDICTED: uncharacterized protein LOC105803348 [Gossypium raimondii]
4 Hb_004018_010 0.1687628668 - - PREDICTED: uncharacterized protein LOC105784835 [Gossypium raimondii]
5 Hb_000709_020 0.1904081283 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_075722_010 0.2219568396 - - hypothetical protein JCGZ_01984 [Jatropha curcas]
7 Hb_163663_010 0.2264741193 - - PREDICTED: uncharacterized protein LOC105629934 [Jatropha curcas]
8 Hb_016354_010 0.2551602825 - - -
9 Hb_012235_010 0.2556817352 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
10 Hb_079902_030 0.2570755441 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002042_240 0.2626913589 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
12 Hb_002850_030 0.2701386374 - - -
13 Hb_000101_280 0.2904443692 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
14 Hb_008408_050 0.311305656 - - -
15 Hb_002652_010 0.314349388 - - -
16 Hb_012807_090 0.3239192404 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
17 Hb_038508_010 0.3254013252 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_004951_050 0.328521189 - - conserved hypothetical protein [Ricinus communis]
19 Hb_014929_010 0.3307984791 - - -
20 Hb_001579_210 0.3345364257 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_056550_010 Hb_056550_010 Hb_000351_150 Hb_000351_150 Hb_056550_010--Hb_000351_150 Hb_087426_010 Hb_087426_010 Hb_056550_010--Hb_087426_010 Hb_004018_010 Hb_004018_010 Hb_056550_010--Hb_004018_010 Hb_000709_020 Hb_000709_020 Hb_056550_010--Hb_000709_020 Hb_075722_010 Hb_075722_010 Hb_056550_010--Hb_075722_010 Hb_163663_010 Hb_163663_010 Hb_056550_010--Hb_163663_010 Hb_000351_150--Hb_087426_010 Hb_000351_150--Hb_004018_010 Hb_000351_150--Hb_000709_020 Hb_000351_150--Hb_075722_010 Hb_000351_150--Hb_163663_010 Hb_087426_010--Hb_000709_020 Hb_087426_010--Hb_163663_010 Hb_087426_010--Hb_004018_010 Hb_000101_280 Hb_000101_280 Hb_087426_010--Hb_000101_280 Hb_004018_010--Hb_000709_020 Hb_004018_010--Hb_163663_010 Hb_012807_090 Hb_012807_090 Hb_004018_010--Hb_012807_090 Hb_000709_020--Hb_163663_010 Hb_000709_020--Hb_000101_280 Hb_038508_010 Hb_038508_010 Hb_075722_010--Hb_038508_010 Hb_000155_240 Hb_000155_240 Hb_075722_010--Hb_000155_240 Hb_075722_010--Hb_087426_010 Hb_000789_140 Hb_000789_140 Hb_075722_010--Hb_000789_140 Hb_163663_010--Hb_000101_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.199975 0 0 0 0 0.0601515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.225208

CAGE analysis