Hb_056691_060

Information

Type -
Description -
Location Contig56691: 92929-120347
Sequence    

Annotation

kegg
ID rcu:RCOM_1761870
description cation-transporting atpase 13a1, putative (EC:3.6.3.8)
nr
ID XP_012071413.1
description PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
swissprot
ID Q9LT02
description Probable manganese-transporting ATPase PDR2 OS=Arabidopsis thaliana GN=PDR2 PE=1 SV=1
trembl
ID A0A067L3Z2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05130 PE=3 SV=1
Gene Ontology
ID GO:0005886
description probable manganese-transporting atpase pdr2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49090: 93232-93430 , PASA_asmbl_49091: 94879-119017 , PASA_asmbl_49093: 114459-114855 , PASA_asmbl_49094: 117231-117475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056691_060 0.0 - - PREDICTED: probable manganese-transporting ATPase PDR2 isoform X1 [Jatropha curcas]
2 Hb_012760_100 0.0570756469 - - Pre-rRNA-processing protein ESF1, putative [Ricinus communis]
3 Hb_000053_040 0.0592398992 - - hypothetical protein CISIN_1g0010392mg, partial [Citrus sinensis]
4 Hb_001449_040 0.0668427363 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
5 Hb_003734_010 0.0677708166 - - PREDICTED: double-strand break repair protein MRE11 [Jatropha curcas]
6 Hb_000872_010 0.0682526364 - - PREDICTED: putative ubiquitin-conjugating enzyme E2 38 [Jatropha curcas]
7 Hb_000830_030 0.0703838206 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
8 Hb_002414_050 0.0704517852 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
9 Hb_001062_010 0.0705179126 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
10 Hb_000613_050 0.0708537052 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
11 Hb_001343_040 0.0710839946 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
12 Hb_008484_060 0.0714629686 - - PREDICTED: allantoate deiminase isoform X3 [Populus euphratica]
13 Hb_009976_020 0.0727440768 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105631286 [Jatropha curcas]
14 Hb_001442_060 0.0738256588 - - PREDICTED: uncharacterized protein LOC105638091 isoform X1 [Jatropha curcas]
15 Hb_002965_090 0.0751589685 - - importin alpha, putative [Ricinus communis]
16 Hb_000110_190 0.0780593832 - - hypothetical protein B456_013G081300 [Gossypium raimondii]
17 Hb_000466_140 0.0787613489 - - hypothetical protein JCGZ_02122 [Jatropha curcas]
18 Hb_004143_160 0.0799327353 - - SAB, putative [Ricinus communis]
19 Hb_000592_030 0.0807870955 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
20 Hb_003517_040 0.0808552155 - - PREDICTED: putative DUF21 domain-containing protein At3g13070, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_056691_060 Hb_056691_060 Hb_012760_100 Hb_012760_100 Hb_056691_060--Hb_012760_100 Hb_000053_040 Hb_000053_040 Hb_056691_060--Hb_000053_040 Hb_001449_040 Hb_001449_040 Hb_056691_060--Hb_001449_040 Hb_003734_010 Hb_003734_010 Hb_056691_060--Hb_003734_010 Hb_000872_010 Hb_000872_010 Hb_056691_060--Hb_000872_010 Hb_000830_030 Hb_000830_030 Hb_056691_060--Hb_000830_030 Hb_009976_020 Hb_009976_020 Hb_012760_100--Hb_009976_020 Hb_004182_050 Hb_004182_050 Hb_012760_100--Hb_004182_050 Hb_007994_010 Hb_007994_010 Hb_012760_100--Hb_007994_010 Hb_012760_100--Hb_003734_010 Hb_005215_010 Hb_005215_010 Hb_012760_100--Hb_005215_010 Hb_002600_150 Hb_002600_150 Hb_000053_040--Hb_002600_150 Hb_000138_100 Hb_000138_100 Hb_000053_040--Hb_000138_100 Hb_001417_030 Hb_001417_030 Hb_000053_040--Hb_001417_030 Hb_000011_060 Hb_000011_060 Hb_000053_040--Hb_000011_060 Hb_000053_040--Hb_003734_010 Hb_000008_290 Hb_000008_290 Hb_001449_040--Hb_000008_290 Hb_000613_050 Hb_000613_050 Hb_001449_040--Hb_000613_050 Hb_001496_070 Hb_001496_070 Hb_001449_040--Hb_001496_070 Hb_001343_040 Hb_001343_040 Hb_001449_040--Hb_001343_040 Hb_005901_020 Hb_005901_020 Hb_001449_040--Hb_005901_020 Hb_004327_040 Hb_004327_040 Hb_003734_010--Hb_004327_040 Hb_003913_070 Hb_003913_070 Hb_003734_010--Hb_003913_070 Hb_001814_030 Hb_001814_030 Hb_003734_010--Hb_001814_030 Hb_003734_010--Hb_009976_020 Hb_003517_040 Hb_003517_040 Hb_003734_010--Hb_003517_040 Hb_000110_190 Hb_000110_190 Hb_000872_010--Hb_000110_190 Hb_001440_030 Hb_001440_030 Hb_000872_010--Hb_001440_030 Hb_000592_030 Hb_000592_030 Hb_000872_010--Hb_000592_030 Hb_000872_010--Hb_000053_040 Hb_001876_010 Hb_001876_010 Hb_000872_010--Hb_001876_010 Hb_000156_010 Hb_000156_010 Hb_000830_030--Hb_000156_010 Hb_008484_060 Hb_008484_060 Hb_000830_030--Hb_008484_060 Hb_004109_080 Hb_004109_080 Hb_000830_030--Hb_004109_080 Hb_000022_020 Hb_000022_020 Hb_000830_030--Hb_000022_020 Hb_002785_050 Hb_002785_050 Hb_000830_030--Hb_002785_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5718 13.4294 9.2893 18.6432 18.5409 21.4979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.875 12.7154 11.0132 23.1823 23.6305

CAGE analysis