Hb_057079_020

Information

Type -
Description -
Location Contig57079: 861-2759
Sequence    

Annotation

kegg
ID rcu:RCOM_0609930
description hypothetical protein
nr
ID XP_002521999.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S7N0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0609930 PE=4 SV=1
Gene Ontology
ID GO:0008466
description vacuolar protein sorting-associated protein 62

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057079_020 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000778_020 0.0917741558 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
3 Hb_001410_010 0.1164963331 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
4 Hb_013749_060 0.1180309373 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
5 Hb_011310_200 0.1182671243 - - grr1, plant, putative [Ricinus communis]
6 Hb_008175_030 0.1189927652 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
7 Hb_010253_020 0.1329142348 - - alcohol dehydrogenase, putative [Ricinus communis]
8 Hb_000189_120 0.1334529195 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like isoform X5 [Jatropha curcas]
9 Hb_004648_100 0.1357786748 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
10 Hb_000589_220 0.1362987254 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
11 Hb_002218_070 0.137395984 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
12 Hb_002928_180 0.1374240516 - - catalase CAT1 [Manihot esculenta]
13 Hb_000236_110 0.1386342666 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
14 Hb_007618_010 0.1447584045 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
15 Hb_008226_100 0.1457681166 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_060909_010 0.1469635293 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
17 Hb_001408_150 0.1479865583 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
18 Hb_005880_010 0.153319846 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
19 Hb_000233_100 0.1583631963 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
20 Hb_002739_060 0.1584005761 - - -

Gene co-expression network

sample Hb_057079_020 Hb_057079_020 Hb_000778_020 Hb_000778_020 Hb_057079_020--Hb_000778_020 Hb_001410_010 Hb_001410_010 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_011310_200 Hb_011310_200 Hb_057079_020--Hb_011310_200 Hb_008175_030 Hb_008175_030 Hb_057079_020--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020 Hb_000778_020--Hb_008175_030 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_000778_020--Hb_010253_020 Hb_001408_150 Hb_001408_150 Hb_000778_020--Hb_001408_150 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_002218_070 Hb_002218_070 Hb_001410_010--Hb_002218_070 Hb_001410_010--Hb_011310_200 Hb_000236_110 Hb_000236_110 Hb_001410_010--Hb_000236_110 Hb_001410_010--Hb_002928_180 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010 Hb_000589_220 Hb_000589_220 Hb_013749_060--Hb_000589_220 Hb_013749_060--Hb_000236_110 Hb_013749_060--Hb_001410_010 Hb_002928_120 Hb_002928_120 Hb_013749_060--Hb_002928_120 Hb_111985_040 Hb_111985_040 Hb_013749_060--Hb_111985_040 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_000866_370 Hb_000866_370 Hb_011310_200--Hb_000866_370 Hb_000216_020 Hb_000216_020 Hb_011310_200--Hb_000216_020 Hb_001544_080 Hb_001544_080 Hb_011310_200--Hb_001544_080 Hb_002739_060 Hb_002739_060 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_008175_030--Hb_001408_150 Hb_000532_130 Hb_000532_130 Hb_008175_030--Hb_000532_130 Hb_000083_130 Hb_000083_130 Hb_010253_020--Hb_000083_130 Hb_010253_020--Hb_000189_120 Hb_001071_060 Hb_001071_060 Hb_010253_020--Hb_001071_060 Hb_010253_020--Hb_002928_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.63967 74.3445 6.29136 29.2493 6.26942 9.33519
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.69556 1.08552 2.42612 50.4228 20.5024

CAGE analysis