Hb_057098_010

Information

Type -
Description -
Location Contig57098: 3544-8811
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057098_010 0.0 - - -
2 Hb_037063_010 0.2029253001 - - -
3 Hb_001638_090 0.2031917927 - - GRF1-INTERACTING FACTOR 2 family protein [Populus trichocarpa]
4 Hb_005539_020 0.210279194 - - -
5 Hb_000098_290 0.212139374 - - -
6 Hb_011249_050 0.218792761 - - -
7 Hb_000796_240 0.2194288142 - - -
8 Hb_000526_030 0.2213794167 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
9 Hb_007125_040 0.2243581599 - - PREDICTED: cationic amino acid transporter 1-like [Jatropha curcas]
10 Hb_005709_010 0.22621781 - - DNA (cytosine-5)-methyltransferase, putative [Ricinus communis]
11 Hb_003581_080 0.2305870942 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
12 Hb_011861_060 0.2331139804 - - -
13 Hb_068804_040 0.2382508212 - - -
14 Hb_001104_110 0.2396589652 - - PREDICTED: splicing factor U2af small subunit B-like [Populus euphratica]
15 Hb_002631_040 0.2458952783 - - hypothetical protein EUGRSUZ_J03178 [Eucalyptus grandis]
16 Hb_002016_040 0.2465281607 rubber biosynthesis Gene Name: SRPP8 PREDICTED: stress-related protein [Jatropha curcas]
17 Hb_003750_060 0.2481484768 - - PREDICTED: protein TIC 40, chloroplastic [Jatropha curcas]
18 Hb_010407_170 0.2497027528 - - PREDICTED: actin-depolymerizing factor-like [Jatropha curcas]
19 Hb_002016_090 0.2517623071 - - PREDICTED: DNA mismatch repair protein PMS1 [Jatropha curcas]
20 Hb_002600_080 0.2526385119 - - nucleic acid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_057098_010 Hb_057098_010 Hb_037063_010 Hb_037063_010 Hb_057098_010--Hb_037063_010 Hb_001638_090 Hb_001638_090 Hb_057098_010--Hb_001638_090 Hb_005539_020 Hb_005539_020 Hb_057098_010--Hb_005539_020 Hb_000098_290 Hb_000098_290 Hb_057098_010--Hb_000098_290 Hb_011249_050 Hb_011249_050 Hb_057098_010--Hb_011249_050 Hb_000796_240 Hb_000796_240 Hb_057098_010--Hb_000796_240 Hb_005709_010 Hb_005709_010 Hb_037063_010--Hb_005709_010 Hb_010407_170 Hb_010407_170 Hb_037063_010--Hb_010407_170 Hb_004785_040 Hb_004785_040 Hb_037063_010--Hb_004785_040 Hb_011861_120 Hb_011861_120 Hb_037063_010--Hb_011861_120 Hb_001541_040 Hb_001541_040 Hb_037063_010--Hb_001541_040 Hb_000648_080 Hb_000648_080 Hb_001638_090--Hb_000648_080 Hb_001104_110 Hb_001104_110 Hb_001638_090--Hb_001104_110 Hb_016734_060 Hb_016734_060 Hb_001638_090--Hb_016734_060 Hb_000768_180 Hb_000768_180 Hb_001638_090--Hb_000768_180 Hb_004916_020 Hb_004916_020 Hb_001638_090--Hb_004916_020 Hb_002890_120 Hb_002890_120 Hb_001638_090--Hb_002890_120 Hb_000526_030 Hb_000526_030 Hb_005539_020--Hb_000526_030 Hb_052764_030 Hb_052764_030 Hb_005539_020--Hb_052764_030 Hb_000023_350 Hb_000023_350 Hb_005539_020--Hb_000023_350 Hb_000802_190 Hb_000802_190 Hb_005539_020--Hb_000802_190 Hb_002631_040 Hb_002631_040 Hb_005539_020--Hb_002631_040 Hb_004319_070 Hb_004319_070 Hb_005539_020--Hb_004319_070 Hb_000098_290--Hb_037063_010 Hb_000098_290--Hb_011249_050 Hb_000098_290--Hb_005539_020 Hb_002400_360 Hb_002400_360 Hb_000098_290--Hb_002400_360 Hb_000098_290--Hb_010407_170 Hb_068804_040 Hb_068804_040 Hb_011249_050--Hb_068804_040 Hb_058722_010 Hb_058722_010 Hb_011249_050--Hb_058722_010 Hb_000679_060 Hb_000679_060 Hb_011249_050--Hb_000679_060 Hb_011861_060 Hb_011861_060 Hb_011249_050--Hb_011861_060 Hb_000008_420 Hb_000008_420 Hb_000796_240--Hb_000008_420 Hb_012539_110 Hb_012539_110 Hb_000796_240--Hb_012539_110 Hb_000088_270 Hb_000088_270 Hb_000796_240--Hb_000088_270 Hb_089140_040 Hb_089140_040 Hb_000796_240--Hb_089140_040 Hb_007423_050 Hb_007423_050 Hb_000796_240--Hb_007423_050 Hb_006588_060 Hb_006588_060 Hb_000796_240--Hb_006588_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.391709 1.00496 0.558711 0.0405919 0.379921 0.0993116
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.39223 0.539475 0 0.820785 0.299222

CAGE analysis