Hb_057183_040

Information

Type -
Description -
Location Contig57183: 15463-19610
Sequence    

Annotation

kegg
ID rcu:RCOM_1465980
description hypothetical protein
nr
ID XP_012080488.1
description PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
swissprot
ID A8MQR0
description WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1
trembl
ID A0A067KHV2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49379: 15674-19527 , PASA_asmbl_49380: 17400-19436 , PASA_asmbl_49381: 15671-17376
cDNA
(Sanger)
(ID:Location)		 014_D07.ab1: 15684-17017 , 028_O20.ab1: 15671-17194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057183_040 0.0 - - PREDICTED: WPP domain-interacting tail-anchored protein 2 [Jatropha curcas]
2 Hb_008453_150 0.0852412834 - - PREDICTED: uncharacterized protein LOC105635307 isoform X2 [Jatropha curcas]
3 Hb_000028_470 0.0896634161 transcription factor TF Family: GNAT N-acetyltransferase, putative [Ricinus communis]
4 Hb_001140_200 0.0973092837 - - PREDICTED: uncharacterized protein LOC105648845 [Jatropha curcas]
5 Hb_001823_100 0.1001006446 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
6 Hb_000120_240 0.1027040338 - - PREDICTED: uncharacterized protein LOC105630166 [Jatropha curcas]
7 Hb_003060_070 0.1028305109 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
8 Hb_001981_070 0.103190212 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
9 Hb_001673_120 0.1042913558 - - PREDICTED: uncharacterized protein LOC105635794 [Jatropha curcas]
10 Hb_000084_310 0.1064188555 - - PREDICTED: rho GTPase-activating protein 4-like [Jatropha curcas]
11 Hb_004994_310 0.1084749829 - - Kiwellin, putative [Ricinus communis]
12 Hb_012340_030 0.1130941152 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
13 Hb_001840_080 0.1131371672 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
14 Hb_000625_020 0.1175308645 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001295_020 0.1193017637 - - Uncharacterized protein TCM_027312 [Theobroma cacao]
16 Hb_000165_030 0.1209622194 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
17 Hb_178968_150 0.1219826376 - - zinc finger protein, putative [Ricinus communis]
18 Hb_185467_010 0.1224679095 - - -
19 Hb_002631_050 0.1230613737 - - membrane associated ring finger 1,8, putative [Ricinus communis]
20 Hb_000017_120 0.123853158 - - PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1 [Jatropha curcas]

Gene co-expression network

sample Hb_057183_040 Hb_057183_040 Hb_008453_150 Hb_008453_150 Hb_057183_040--Hb_008453_150 Hb_000028_470 Hb_000028_470 Hb_057183_040--Hb_000028_470 Hb_001140_200 Hb_001140_200 Hb_057183_040--Hb_001140_200 Hb_001823_100 Hb_001823_100 Hb_057183_040--Hb_001823_100 Hb_000120_240 Hb_000120_240 Hb_057183_040--Hb_000120_240 Hb_003060_070 Hb_003060_070 Hb_057183_040--Hb_003060_070 Hb_185467_020 Hb_185467_020 Hb_008453_150--Hb_185467_020 Hb_002631_050 Hb_002631_050 Hb_008453_150--Hb_002631_050 Hb_000084_310 Hb_000084_310 Hb_008453_150--Hb_000084_310 Hb_001981_070 Hb_001981_070 Hb_008453_150--Hb_001981_070 Hb_014568_030 Hb_014568_030 Hb_008453_150--Hb_014568_030 Hb_005754_020 Hb_005754_020 Hb_000028_470--Hb_005754_020 Hb_178968_150 Hb_178968_150 Hb_000028_470--Hb_178968_150 Hb_001493_100 Hb_001493_100 Hb_000028_470--Hb_001493_100 Hb_002377_040 Hb_002377_040 Hb_000028_470--Hb_002377_040 Hb_001673_120 Hb_001673_120 Hb_000028_470--Hb_001673_120 Hb_000784_090 Hb_000784_090 Hb_000028_470--Hb_000784_090 Hb_001140_200--Hb_001673_120 Hb_001140_200--Hb_001823_100 Hb_001936_050 Hb_001936_050 Hb_001140_200--Hb_001936_050 Hb_001140_200--Hb_001981_070 Hb_001140_200--Hb_000028_470 Hb_012340_030 Hb_012340_030 Hb_001823_100--Hb_012340_030 Hb_001609_030 Hb_001609_030 Hb_001823_100--Hb_001609_030 Hb_001274_030 Hb_001274_030 Hb_001823_100--Hb_001274_030 Hb_000165_030 Hb_000165_030 Hb_001823_100--Hb_000165_030 Hb_000017_120 Hb_000017_120 Hb_001823_100--Hb_000017_120 Hb_007152_020 Hb_007152_020 Hb_001823_100--Hb_007152_020 Hb_004449_220 Hb_004449_220 Hb_000120_240--Hb_004449_220 Hb_000956_130 Hb_000956_130 Hb_000120_240--Hb_000956_130 Hb_000625_020 Hb_000625_020 Hb_000120_240--Hb_000625_020 Hb_005662_030 Hb_005662_030 Hb_000120_240--Hb_005662_030 Hb_000120_240--Hb_000028_470 Hb_000270_420 Hb_000270_420 Hb_003060_070--Hb_000270_420 Hb_000025_480 Hb_000025_480 Hb_003060_070--Hb_000025_480 Hb_000571_070 Hb_000571_070 Hb_003060_070--Hb_000571_070 Hb_000789_190 Hb_000789_190 Hb_003060_070--Hb_000789_190 Hb_002067_160 Hb_002067_160 Hb_003060_070--Hb_002067_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
60.9053 6.01364 9.01049 8.1846 25.1038 43.7846
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2705 25.7885 37.2998 5.65992 6.4484

CAGE analysis