Hb_057217_010

Information

Type -
Description -
Location Contig57217: 341-649
Sequence    

Annotation

kegg
ID bvg:104886355
description uncharacterized LOC104886355
nr
ID XP_010253000.1
description PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A0B2QIK8
description Uncharacterized protein (Fragment) OS=Glycine soja GN=glysoja_049118 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_057217_010 0.0 - - PREDICTED: uncharacterized protein LOC104594412 [Nelumbo nucifera]
2 Hb_172632_020 0.1467346898 - - -
3 Hb_004361_030 0.211970358 - - PREDICTED: uncharacterized protein LOC104239397 isoform X1 [Nicotiana sylvestris]
4 Hb_001218_080 0.2267495041 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
5 Hb_002367_120 0.230032696 - - -
6 Hb_000270_850 0.2339942092 - - conserved hypothetical protein [Ricinus communis]
7 Hb_126907_010 0.2345392485 - - -
8 Hb_097433_020 0.2404081086 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_084611_010 0.2489382544 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
10 Hb_150998_010 0.2489970356 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_000117_170 0.2498178894 - - PREDICTED: uncharacterized protein LOC104088736 isoform X2 [Nicotiana tomentosiformis]
12 Hb_006216_010 0.2511050077 - - PREDICTED: uncharacterized protein LOC103411650 [Malus domestica]
13 Hb_000407_060 0.2548187069 - - -
14 Hb_046117_040 0.257876603 - - hypothetical protein JCGZ_07941 [Jatropha curcas]
15 Hb_001250_110 0.2591736982 transcription factor TF Family: HB hypothetical protein POPTR_0010s05340g [Populus trichocarpa]
16 Hb_000281_170 0.2600005561 - - polyprotein [Citrus endogenous pararetrovirus]
17 Hb_000849_110 0.2724242472 - - PREDICTED: uncharacterized protein LOC105179663 [Sesamum indicum]
18 Hb_012052_030 0.2841001772 - - -
19 Hb_029393_020 0.2874944901 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-LIKE 12-like [Jatropha curcas]
20 Hb_002774_130 0.2892861596 - - -

Gene co-expression network

sample Hb_057217_010 Hb_057217_010 Hb_172632_020 Hb_172632_020 Hb_057217_010--Hb_172632_020 Hb_004361_030 Hb_004361_030 Hb_057217_010--Hb_004361_030 Hb_001218_080 Hb_001218_080 Hb_057217_010--Hb_001218_080 Hb_002367_120 Hb_002367_120 Hb_057217_010--Hb_002367_120 Hb_000270_850 Hb_000270_850 Hb_057217_010--Hb_000270_850 Hb_126907_010 Hb_126907_010 Hb_057217_010--Hb_126907_010 Hb_172632_020--Hb_002367_120 Hb_000407_060 Hb_000407_060 Hb_172632_020--Hb_000407_060 Hb_172632_020--Hb_004361_030 Hb_172632_020--Hb_001218_080 Hb_150998_010 Hb_150998_010 Hb_172632_020--Hb_150998_010 Hb_027337_070 Hb_027337_070 Hb_004361_030--Hb_027337_070 Hb_003185_060 Hb_003185_060 Hb_004361_030--Hb_003185_060 Hb_006216_010 Hb_006216_010 Hb_004361_030--Hb_006216_010 Hb_004361_030--Hb_150998_010 Hb_156850_110 Hb_156850_110 Hb_001218_080--Hb_156850_110 Hb_000684_170 Hb_000684_170 Hb_001218_080--Hb_000684_170 Hb_001501_050 Hb_001501_050 Hb_001218_080--Hb_001501_050 Hb_001218_080--Hb_000270_850 Hb_084611_010 Hb_084611_010 Hb_001218_080--Hb_084611_010 Hb_002367_120--Hb_000407_060 Hb_000175_550 Hb_000175_550 Hb_002367_120--Hb_000175_550 Hb_147996_010 Hb_147996_010 Hb_002367_120--Hb_147996_010 Hb_029393_020 Hb_029393_020 Hb_002367_120--Hb_029393_020 Hb_000270_850--Hb_156850_110 Hb_138628_010 Hb_138628_010 Hb_000270_850--Hb_138628_010 Hb_007441_060 Hb_007441_060 Hb_000270_850--Hb_007441_060 Hb_116635_010 Hb_116635_010 Hb_000270_850--Hb_116635_010 Hb_006615_040 Hb_006615_040 Hb_000270_850--Hb_006615_040 Hb_126907_010--Hb_084611_010 Hb_000117_170 Hb_000117_170 Hb_126907_010--Hb_000117_170 Hb_000281_170 Hb_000281_170 Hb_126907_010--Hb_000281_170 Hb_000849_110 Hb_000849_110 Hb_126907_010--Hb_000849_110 Hb_046117_040 Hb_046117_040 Hb_126907_010--Hb_046117_040 Hb_126907_010--Hb_150998_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.14606 2.27013 0.253452 0 0 0.871012
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.505747 0

CAGE analysis